Back to Long Tests report for BioC 3.14

This page was generated on 2022-04-09 21:00:03 -0400 (Sat, 09 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4322
riesling1Windows Server 2019 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4108
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4135
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbChebi on riesling1


To the developers/maintainers of the biodbChebi package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 5/19HostnameOS / ArchCHECK
biodbChebi 1.0.1  (landing page)
Pierrick Roger
Snapshot Date: 2022-04-09 06:55:01 -0400 (Sat, 09 Apr 2022)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_14
git_last_commit: 35326c0
git_last_commit_date: 2021-10-27 06:00:18 -0400 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK  
riesling1Windows Server 2019 Standard / x64  OK  
machv2macOS 10.14.6 Mojave / x86_64  OK  

Summary

Package: biodbChebi
Version: 1.0.1
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.0.1.tar.gz
StartedAt: 2022-04-09 08:04:23 -0400 (Sat, 09 Apr 2022)
EndedAt: 2022-04-09 08:06:59 -0400 (Sat, 09 Apr 2022)
EllapsedTime: 155.8 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests_i386/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-04-09 08:05:04.580][biodb::testContext] 
biodb.INFO [2022-04-09 08:05:04.580][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:05:04.595][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-04-09 08:05:04.595][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:05:04.595][biodb::testContext] 
biodb.INFO [2022-04-09 08:05:04.595][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2022-04-09 08:05:04.611][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-09 08:05:04.627][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:05:04.627][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-09 08:05:04.627][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-09 08:05:04.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.627][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-09 08:05:04.642][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-09 08:05:04.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.642][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-09 08:05:04.642][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-09 08:05:04.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.642][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-09 08:05:04.642][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-09 08:05:04.642][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-09 08:05:04.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.658][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-09 08:05:04.658][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-09 08:05:04.658][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-09 08:05:04.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.658][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-09 08:05:04.658][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-09 08:05:04.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.658][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-09 08:05:04.658][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-09 08:05:04.658][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-09 08:05:04.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.658][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-09 08:05:04.658][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-09 08:05:04.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-09 08:05:04.674][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-09 08:05:04.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-09 08:05:04.674][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-09 08:05:04.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.674][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-09 08:05:04.674][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-09 08:05:04.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.689][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-09 08:05:04.689][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-09 08:05:04.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.689][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-09 08:05:04.689][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-09 08:05:04.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.689][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-09 08:05:04.705][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-09 08:05:04.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.705][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-09 08:05:04.705][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-09 08:05:04.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.705][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:05:04.705][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-09 08:05:04.705][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-09 08:05:04.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.705][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-09 08:05:04.705][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-09 08:05:04.720][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-09 08:05:04.736][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.752][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:04.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:04.767][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.767][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:04.767][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:04.783][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.783][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.783][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:04.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:04.814][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.814][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-09 08:05:04.814][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:04.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:04.830][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:04.830][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:04.830][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:05:04.830][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:04.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:04.892][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-09 08:05:04.908][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-09 08:05:04.924][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-09 08:05:04.939][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-09 08:05:04.955][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-09 08:05:04.970][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-09 08:05:04.986][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-09 08:05:05.002][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-09 08:05:05.002][initialize] This is biodb version 1.2.1.
biodb.DEBUG[2022-04-09 08:05:05.002][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:05.095][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-09 08:05:05.095][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:05.095][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:05.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:05.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:05.111][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-09 08:05:05.111][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-09 08:05:05.127][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:05:05.127][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:05:05.127][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-09 08:05:05.127][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:05:05.127][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:05:05.127][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:05:05.142][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-09 08:05:05.142][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-09 08:05:05.142][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-09 08:05:05.142][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-09 08:05:05.158][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:05:05.158][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:05:05.158][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-09 08:05:05.158][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-09 08:05:05.174][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:05.174][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-04-09 08:05:05.174][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:05.174][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:05.174][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-04-09 08:05:05.174][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:05.174][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:05.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:05.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:05.205][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.220][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.267][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.283][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.283][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.299][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.299][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:05.314][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.314][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:05.377][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.502][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.517][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.533][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.548][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.564][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.564][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.580][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.580][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.595][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.642][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.658][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.658][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.752][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.767][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.783][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.798][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2022-04-09 08:05:05.830][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:05.830][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:05.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:05.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:05.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:05.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:05.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:05.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:05.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:05.830][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.845][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.861][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.861][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.892][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:05.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.892][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.939][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:05.970][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2022-04-09 08:05:05.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.080][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.127][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.127][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.142][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.142][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.158][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:06.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.205][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.220][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.236][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.267][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.314][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.361][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.376][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2022-04-09 08:05:06.376][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:06.376][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:06.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:06.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:06.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:06.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:06.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:06.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:06.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:06.376][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.392][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.392][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.392][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.392][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.408][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:06.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.439][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.455][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.455][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:06.517][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.595][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.611][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.705][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.705][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.736][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.751][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.767][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.783][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.798][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.830][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.845][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:06.845][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:06.845][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-09 08:05:06.845][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:06.861][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:05:06.861][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2022-04-09 08:05:06.861][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-09 08:05:06.861][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2022-04-09 08:05:06.861][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-04-09 08:05:06.876][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-04-09 08:05:06.876][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:06.892][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-04-09 08:05:06.892][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:06.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:06.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:06.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:06.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:06.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:06.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:06.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:06.892][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:06.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:06.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.908][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.908][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:06.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.923][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.939][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.939][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.955][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:06.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.970][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:06.986][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:07.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:07.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:07.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:07.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:07.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:07.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:07.033][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.033][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.033][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:07.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:07.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.048][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.048][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.048][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.064][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.080][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.080][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.080][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.111][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.126][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:07.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:07.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:07.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:07.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:07.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:07.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:07.158][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.173][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:07.173][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:07.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.173][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.189][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.189][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.220][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.236][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.236][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.314][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:05:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:07.345][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.345][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-09 08:05:07.345][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:07.361][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:07.361][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.361][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.361][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.376][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-04-09 08:05:07.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-09 08:05:07.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:07.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-09 08:05:07.408][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:07.423][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-09 08:05:07.439][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:07.439][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:07.439][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:07.439][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:07.439][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:05:07.439][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.454][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:07.454][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.454][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-04-09 08:05:07.454][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:07.454][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:07.517][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:07.517][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:07.517][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:07.517][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:07.517][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-04-09 08:05:07.517][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.517][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-04-09 08:05:07.517][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:07.533][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:05:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:05:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:07.611][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.626][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:07.626][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-09 08:05:07.626][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:07.626][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:05:07.626][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-04-09 08:05:08.689][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-04-09 08:05:09.829][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:09.829][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-09 08:05:09.829][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:09.829][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:05:10.329][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-04-09 08:05:10.829][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:10.829][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-04-09 08:05:10.829][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:10.829][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:10.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:10.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:10.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:10.860][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:10.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:10.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:10.860][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:05:10.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:10.876][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:10.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:10.876][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:10.876][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-04-09 08:05:10.876][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:10.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:10.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:10.923][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:10.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:10.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:10.923][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:10.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:10.938][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:10.938][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:10.938][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:10.938][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:10.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:10.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:10.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:10.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:10.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:10.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:10.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:10.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:10.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:10.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:10.970][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:10.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:10.970][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:10.970][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:10.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:10.985][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:10.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:10.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:10.985][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:05:11.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.016][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-04-09 08:05:11.048][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-04-09 08:05:11.048][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:11.063][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2022-04-09 08:05:11.063][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.063][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.063][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.157][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.188][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-04-09 08:05:11.188][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.188][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-04-09 08:05:11.188][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:11.188][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2022-04-09 08:05:11.188][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.204][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.204][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.204][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.298][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.313][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-04-09 08:05:11.313][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.313][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-04-09 08:05:11.313][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:11.313][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2022-04-09 08:05:11.329][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.329][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.329][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.329][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.345][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.376][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.391][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.423][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.438][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-04-09 08:05:11.438][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.438][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-04-09 08:05:11.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:11.454][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2022-04-09 08:05:11.454][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.454][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.470][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.532][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.595][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.610][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-04-09 08:05:11.610][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-04-09 08:05:11.610][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:11.626][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2022-04-09 08:05:11.626][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.626][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.626][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.641][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.657][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.673][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.720][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.751][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.766][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-04-09 08:05:11.766][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-04-09 08:05:11.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:11.782][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2022-04-09 08:05:11.782][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.782][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.782][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.798][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.829][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.907][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:11.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:11.923][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-04-09 08:05:11.923][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:11.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-04-09 08:05:11.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:11.923][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2022-04-09 08:05:11.923][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:11.938][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:11.938][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:11.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:11.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:11.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:11.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:11.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:11.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:11.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:11.938][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.954][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:11.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.985][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:11.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:11.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:11.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:11.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.001][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.063][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.079][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-04-09 08:05:12.079][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-04-09 08:05:12.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:12.079][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2022-04-09 08:05:12.079][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.094][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.094][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.094][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.094][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.126][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.173][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.173][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.204][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-04-09 08:05:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.219][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-04-09 08:05:12.219][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-04-09 08:05:12.235][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:12.235][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2022-04-09 08:05:12.235][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.235][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.235][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.251][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.251][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.298][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.360][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.376][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-04-09 08:05:12.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.391][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-04-09 08:05:12.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:12.391][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2022-04-09 08:05:12.391][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.391][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.391][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.407][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.407][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.454][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.516][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.532][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-04-09 08:05:12.532][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.532][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-04-09 08:05:12.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:12.548][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2022-04-09 08:05:12.548][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.548][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.563][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.579][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.610][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.610][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.610][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.626][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.657][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.673][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-04-09 08:05:12.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.673][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-04-09 08:05:12.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:12.688][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2022-04-09 08:05:12.688][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.688][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.688][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.704][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.751][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.797][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.813][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-04-09 08:05:12.813][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-04-09 08:05:12.813][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:12.829][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2022-04-09 08:05:12.829][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.829][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.829][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:12.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:12.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:12.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.876][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.954][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:12.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:12.969][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-04-09 08:05:12.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:12.969][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-04-09 08:05:12.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:12.969][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2022-04-09 08:05:12.969][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:12.985][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:12.985][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:12.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:12.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:12.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:12.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:12.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:12.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:12.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:12.985][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.110][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.126][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-04-09 08:05:13.126][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:13.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-04-09 08:05:13.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:13.126][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2022-04-09 08:05:13.126][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:13.141][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:13.141][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:13.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.141][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.157][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.204][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.219][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.266][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.282][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-04-09 08:05:13.282][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:13.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-04-09 08:05:13.282][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:13.282][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2022-04-09 08:05:13.282][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:13.297][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:13.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:13.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.297][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.329][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.344][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.376][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.407][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.422][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-04-09 08:05:13.438][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:13.438][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-04-09 08:05:13.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:13.438][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2022-04-09 08:05:13.438][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:13.438][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:13.438][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:13.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.454][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.454][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.454][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.469][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.469][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.501][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.501][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.532][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.532][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.563][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:13.594][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:13.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:13.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:13.594][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:05:13.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:13.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:13.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:13.954][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:13.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1eb5a44d25716d90ff717fcfe93533e3".
biodb.TRACE[2022-04-09 08:05:13.954][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:13.954][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content".
biodb.DEBUG[2022-04-09 08:05:13.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:13.954][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:13.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4ef91a3654a792571304ae6f83c5871b".
biodb.TRACE[2022-04-09 08:05:13.954][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:13.969][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content".
biodb.DEBUG[2022-04-09 08:05:13.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:13.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:13.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:13.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:13.969][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-04-09 08:05:13.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:13.969][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-04-09 08:05:13.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:13.985][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2022-04-09 08:05:13.985][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:13.985][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:13.985][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:13.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:13.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:13.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:13.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.032][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.063][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.079][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.110][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:14.141][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-04-09 08:05:14.141][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:14.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-04-09 08:05:14.141][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:14.157][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2022-04-09 08:05:14.157][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:14.172][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:14.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:14.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.172][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.188][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.188][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.297][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:14.313][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:14.313][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:14.313][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:14.313][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:05:14.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:14.641][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:14.641][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:05:14.641][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:14.641][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:05:14.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:14.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:14.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:14.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:14.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:14.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:14.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:14.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:14.953][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:14.953][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-09 08:05:14.953][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:14.953][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:15.063][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:15.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:15.063][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.063][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:15.063][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:15.063][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:15.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:15.063][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.063][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:15.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:15.094][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:15.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:15.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.094][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:15.094][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:15.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:15.110][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:15.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:15.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:15.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:15.110][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.125][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:15.141][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:15.141][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:15.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.188][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:15.188][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:15.188][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:15.188][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.188][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:15.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.203][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2022-04-09 08:05:15.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:15.203][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2022-04-09 08:05:15.203][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.203][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml".
biodb.DEBUG[2022-04-09 08:05:15.203][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:15.219][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:15.219][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:15.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.219][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.235][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.235][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.250][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.250][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.282][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.297][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.297][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.313][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.360][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.375][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2022-04-09 08:05:15.375][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:15.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2022-04-09 08:05:15.375][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.391][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml".
biodb.DEBUG[2022-04-09 08:05:15.391][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:15.391][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:15.391][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:15.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.407][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.407][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.407][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.422][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.422][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.422][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.485][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.485][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.531][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.547][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:15.547][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:15.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:15.547][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.563][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:15.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.563][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2022-04-09 08:05:15.563][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:15.563][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2022-04-09 08:05:15.563][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.578][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml".
biodb.DEBUG[2022-04-09 08:05:15.578][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:15.578][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:15.578][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:15.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.594][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.594][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.610][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.641][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.641][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.688][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.735][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.750][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2022-04-09 08:05:15.750][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:15.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2022-04-09 08:05:15.750][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.750][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml".
biodb.DEBUG[2022-04-09 08:05:15.750][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:15.766][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:15.766][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:15.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.766][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.781][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:15.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.828][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.828][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:15.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.844][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:15.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:15.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.860][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.860][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.860][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:15.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:15.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.906][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:15.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:15.922][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2022-04-09 08:05:15.922][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:15.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2022-04-09 08:05:15.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:15.938][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml".
biodb.DEBUG[2022-04-09 08:05:15.938][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:15.938][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:15.938][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:15.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:15.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:15.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:15.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:15.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:15.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:15.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:15.953][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:15.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:15.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.953][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.969][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:15.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:15.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:15.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:15.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.000][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.078][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.110][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:16.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.141][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:16.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:16.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:16.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.156][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:16.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.188][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:16.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:16.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:16.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.188][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:16.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:16.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.219][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:16.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:16.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:16.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.235][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:16.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.235][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:16.250][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:16.250][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:16.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:16.281][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:16.297][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:16.297][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:16.297][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:16.297][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:16.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:16.313][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2022-04-09 08:05:16.313][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:16.313][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2022-04-09 08:05:16.313][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:16.313][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml".
biodb.DEBUG[2022-04-09 08:05:16.313][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:16.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:16.328][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:16.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.328][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.328][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.360][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.360][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.360][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.391][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.406][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.422][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.422][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.422][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.453][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2022-04-09 08:05:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:16.469][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2022-04-09 08:05:16.484][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:16.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2022-04-09 08:05:16.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:16.484][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml".
biodb.DEBUG[2022-04-09 08:05:16.484][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:16.500][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:16.500][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:16.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.500][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.516][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.609][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.719][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:16.734][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2022-04-09 08:05:16.734][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:16.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2022-04-09 08:05:16.734][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:16.750][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml".
biodb.DEBUG[2022-04-09 08:05:16.750][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:16.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:16.750][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:16.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.766][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.781][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.797][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.813][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.828][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.844][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.844][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.859][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.891][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:16.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:16.906][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2022-04-09 08:05:16.906][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:16.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2022-04-09 08:05:16.906][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:16.922][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml".
biodb.DEBUG[2022-04-09 08:05:16.922][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:16.922][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:16.922][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:16.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:16.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:16.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:16.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:16.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:16.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:16.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:16.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:16.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.938][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.953][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.953][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.969][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.984][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:16.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:16.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:16.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.000][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.000][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.063][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.078][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2022-04-09 08:05:17.078][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:17.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2022-04-09 08:05:17.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.078][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml".
biodb.DEBUG[2022-04-09 08:05:17.078][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:17.094][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.094][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.094][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.109][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.109][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.109][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.109][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.125][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.141][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.172][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.172][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.188][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.219][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.234][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2022-04-09 08:05:17.250][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:17.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2022-04-09 08:05:17.250][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.250][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml".
biodb.DEBUG[2022-04-09 08:05:17.250][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:17.250][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.266][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.266][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.266][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.266][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.281][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.281][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.281][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.297][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.313][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.313][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.328][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.328][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.344][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.344][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.391][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.406][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2022-04-09 08:05:17.406][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:17.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2022-04-09 08:05:17.406][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.422][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml".
biodb.DEBUG[2022-04-09 08:05:17.422][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:17.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.422][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.437][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.437][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.437][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.453][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.469][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.516][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.562][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.578][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:17.578][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:17.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:17.578][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.578][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:17.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.609][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2022-04-09 08:05:17.609][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:17.609][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2022-04-09 08:05:17.609][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml".
biodb.DEBUG[2022-04-09 08:05:17.609][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:17.625][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.625][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.625][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.625][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.641][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.641][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.687][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.703][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.750][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.766][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:17.766][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:17.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:17.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.781][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:17.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.781][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2022-04-09 08:05:17.781][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:17.781][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2022-04-09 08:05:17.781][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.797][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml".
biodb.DEBUG[2022-04-09 08:05:17.797][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:17.797][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.828][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:17.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:17.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.937][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:17.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:17.953][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2022-04-09 08:05:17.953][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:17.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2022-04-09 08:05:17.953][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:17.969][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml".
biodb.DEBUG[2022-04-09 08:05:17.969][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:17.969][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:17.969][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:17.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:17.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:17.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:17.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:17.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:17.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:17.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:17.984][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:17.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:17.984][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:17.984][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:17.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.000][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.016][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.047][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.062][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.078][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.109][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.125][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:18.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.141][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:18.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:18.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:18.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.141][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.156][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:18.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.172][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:18.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:18.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:18.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.187][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.187][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:18.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.219][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:18.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:18.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:18.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.219][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.219][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.234][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:05:18.234][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:18.234][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.359][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:18.359][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:18.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:18.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:18.359][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:18.359][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:18.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:18.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:18.375][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:18.375][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:18.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.422][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:18.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.437][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:18.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:18.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:18.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.437][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.453][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:18.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.484][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:18.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:18.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:18.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.500][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.515][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:18.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.531][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:18.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:18.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:18.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.547][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.547][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:18.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:18.562][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:18.562][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:18.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.609][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:18.609][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:18.609][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:18.609][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:18.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:18.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.640][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2022-04-09 08:05:18.640][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:18.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2022-04-09 08:05:18.640][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:18.640][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml".
biodb.DEBUG[2022-04-09 08:05:18.640][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:18.656][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:18.656][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:18.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.656][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.656][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:18.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:18.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.672][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.703][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.719][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.719][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.734][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.734][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.750][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.781][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2022-04-09 08:05:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:18.797][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2022-04-09 08:05:18.797][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:18.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2022-04-09 08:05:18.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:18.812][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml".
biodb.DEBUG[2022-04-09 08:05:18.812][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:18.812][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:18.812][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:18.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.828][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.844][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:18.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:18.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:18.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:18.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:18.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:18.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.953][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:18.969][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:18.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:18.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:18.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:18.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:18.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:18.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:18.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.984][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:18.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:18.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:18.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:18.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:18.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.000][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:19.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.015][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.031][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.031][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:19.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.047][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.062][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.062][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:19.078][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:19.078][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:19.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:19.125][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:19.125][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:19.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:19.125][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.125][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:19.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:19.156][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2022-04-09 08:05:19.156][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:19.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2022-04-09 08:05:19.156][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.156][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml".
biodb.DEBUG[2022-04-09 08:05:19.156][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:19.172][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:19.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:19.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.172][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.187][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.187][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.297][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:19.328][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2022-04-09 08:05:19.328][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:19.328][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2022-04-09 08:05:19.328][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.328][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml".
biodb.DEBUG[2022-04-09 08:05:19.328][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:19.343][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:19.343][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:19.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.343][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:19.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:19.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:19.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:19.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:19.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.406][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.406][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.422][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.422][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.422][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.422][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.437][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.437][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.468][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.484][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:19.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.500][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.500][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.500][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.515][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:19.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.531][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.547][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.547][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:05:19.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.578][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.593][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:05:19.593][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:19.593][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:19.609][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:19.609][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-09 08:05:19.609][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:19.609][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:19.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:19.703][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:19.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:19.703][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.718][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:19.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:19.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:19.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:19.718][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.718][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:19.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.734][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:19.734][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:19.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:19.734][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.750][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:19.750][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:19.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.765][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.765][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:19.781][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:19.781][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:19.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:19.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:19.828][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:19.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:19.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.828][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:19.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:19.875][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:19.875][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:19.875][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:19.875][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:19.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:19.922][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:19.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.937][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.937][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.937][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.953][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:19.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:19.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:19.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:19.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:19.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:19.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:19.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.968][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:19.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:19.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:19.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:19.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.984][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:20.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.000][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:20.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.015][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.015][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:20.031][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:20.031][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:20.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.078][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:20.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.078][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:20.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.109][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:20.125][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.125][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:20.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.156][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2022-04-09 08:05:20.156][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:20.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2022-04-09 08:05:20.156][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.171][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml".
biodb.DEBUG[2022-04-09 08:05:20.171][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:20.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:20.171][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:20.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.187][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.187][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.187][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:20.187][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:20.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.203][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:20.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:20.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.250][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.250][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:20.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:20.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.265][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:20.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:20.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:20.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:20.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.312][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2022-04-09 08:05:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.328][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2022-04-09 08:05:20.328][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:20.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2022-04-09 08:05:20.343][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.343][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml".
biodb.DEBUG[2022-04-09 08:05:20.343][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:20.359][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:20.359][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:20.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.359][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.359][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:20.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:20.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.375][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:20.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:20.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.390][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.406][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:20.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:20.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:20.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:20.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.453][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:20.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:20.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:20.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:20.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.500][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.515][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:20.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.515][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:20.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.531][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.531][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.531][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:20.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.562][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:20.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.578][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:05:20.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.593][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:20.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.609][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2022-04-09 08:05:20.625][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:20.625][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.703][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:20.718][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.718][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:20.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:20.718][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.718][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:20.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.765][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:20.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.781][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:20.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.796][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.796][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.796][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:20.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.812][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:20.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.828][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.828][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:20.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.859][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:20.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:20.859][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:20.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.859][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.875][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.875][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:20.875][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:20.875][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:20.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:20.921][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:20.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90efcfe115f7c339aea3aa4183474f2a".
biodb.TRACE[2022-04-09 08:05:20.921][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.937][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90efcfe115f7c339aea3aa4183474f2a.content".
biodb.DEBUG[2022-04-09 08:05:20.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:20.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:20.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:20.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:20.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:20.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:20.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:20.968][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2022-04-09 08:05:20.968][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:20.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2022-04-09 08:05:20.968][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:20.984][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml".
biodb.DEBUG[2022-04-09 08:05:20.984][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:20.984][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:20.984][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:20.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:20.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:20.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.015][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.015][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.031][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.062][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.062][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.078][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.078][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.093][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.124][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.140][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:21.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.156][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:21.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.171][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.171][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:21.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.187][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:21.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.203][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.203][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.203][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.218][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:21.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.234][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:21.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:21.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:21.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.234][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.249][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2022-04-09 08:05:21.249][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:21.249][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:21.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.296][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:21.296][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:21.296][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:21.296][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.296][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:21.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.359][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2022-04-09 08:05:21.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:21.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2022-04-09 08:05:21.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.374][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml".
biodb.DEBUG[2022-04-09 08:05:21.374][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:21.374][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:21.374][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:21.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.468][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.515][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.531][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2022-04-09 08:05:21.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:21.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2022-04-09 08:05:21.531][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.531][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml".
biodb.DEBUG[2022-04-09 08:05:21.531][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:21.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:21.546][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:21.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.546][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.562][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.562][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.593][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.671][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.687][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2022-04-09 08:05:21.703][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:21.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2022-04-09 08:05:21.703][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.703][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml".
biodb.DEBUG[2022-04-09 08:05:21.703][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:21.718][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:21.718][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:21.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.718][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.734][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.765][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.765][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.781][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.796][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.796][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.796][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.859][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:21.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:21.874][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2022-04-09 08:05:21.874][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:21.874][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2022-04-09 08:05:21.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:21.874][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml".
biodb.DEBUG[2022-04-09 08:05:21.874][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:21.890][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:21.890][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:21.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:21.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:21.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:21.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:21.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:21.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:21.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:21.890][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.906][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.906][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:21.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.953][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.031][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.046][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2022-04-09 08:05:22.046][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:22.046][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2022-04-09 08:05:22.046][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.046][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml".
biodb.DEBUG[2022-04-09 08:05:22.046][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:22.062][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:22.062][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:22.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.062][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.077][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:22.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:22.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:22.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.109][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.140][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:22.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:22.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.140][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:22.156][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:22.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.156][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.187][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.202][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2022-04-09 08:05:22.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:22.202][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2022-04-09 08:05:22.202][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.218][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml".
biodb.DEBUG[2022-04-09 08:05:22.218][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:22.218][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:22.218][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:22.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.234][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.234][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:22.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.265][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.281][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.296][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:22.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:22.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.359][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.374][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2022-04-09 08:05:22.374][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:22.374][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2022-04-09 08:05:22.374][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.390][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml".
biodb.DEBUG[2022-04-09 08:05:22.390][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:22.390][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:22.390][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:22.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.406][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:22.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.437][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.437][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:22.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:22.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.468][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:22.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:22.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.484][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.531][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.531][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:22.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.546][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:22.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.562][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.577][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:05:22.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.593][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:22.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.593][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2022-04-09 08:05:22.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.624][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:22.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.640][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.640][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.656][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2022-04-09 08:05:22.656][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:22.656][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:22.671][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:22.671][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-09 08:05:22.671][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:22.671][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.765][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.765][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:22.765][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.765][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:22.765][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.765][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:22.765][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.781][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:22.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.796][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:22.796][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.796][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:22.796][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:22.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.812][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:22.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.827][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:22.843][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:22.843][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:22.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:22.890][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.890][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.890][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:22.890][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.890][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:22.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:22.921][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:22.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:22.921][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:22.921][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:22.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:22.968][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:22.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:22.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:22.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:22.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:22.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:22.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:22.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.984][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:22.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:22.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:22.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.984][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:22.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:23.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.015][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.030][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:23.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.062][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.062][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.062][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:23.077][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:23.077][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:23.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:23.124][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.140][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:23.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.140][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:23.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.249][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:23.249][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.249][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:23.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.280][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:23.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.280][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:23.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.327][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:23.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.327][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.343][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:23.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.374][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.374][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.390][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:23.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.405][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.405][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.421][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.421][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:05:23.437][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:23.437][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:23.515][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.530][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:23.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.530][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:23.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.530][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:23.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.530][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:23.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:23.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.593][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.609][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.609][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.624][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:23.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.640][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.640][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.655][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:23.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.671][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.687][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.687][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:23.702][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:23.702][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:23.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:23.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.749][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:23.749][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.749][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:23.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.796][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:23.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.812][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.812][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.812][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.827][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:23.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.843][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.843][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.858][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.858][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:23.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.874][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:23.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:23.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:23.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.890][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:23.905][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:23.905][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:23.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:23.952][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:23.952][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:23.952][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:23.952][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:23.952][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:23.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:23.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:23.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:23.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:23.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:23.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:23.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:23.999][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:23.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.015][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:24.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:24.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:24.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.030][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:24.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.062][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:24.062][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:24.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:24.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.062][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.062][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:05:24.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.093][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:24.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:24.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:24.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.093][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.108][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.108][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:05:24.124][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:24.124][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:24.140][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:24.140][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-04-09 08:05:24.140][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:24.140][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:24.233][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:24.233][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:24.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "73049ee91ee5cceff4f3bc8a5644d766".
biodb.TRACE[2022-04-09 08:05:24.233][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:24.249][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content".
biodb.DEBUG[2022-04-09 08:05:24.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:24.249][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2022-04-09 08:05:24.249][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:24.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2022-04-09 08:05:24.249][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:24.265][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml".
biodb.DEBUG[2022-04-09 08:05:24.265][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:24.265][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:24.265][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:24.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.280][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.280][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.296][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.312][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.327][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.374][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.421][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:24.437][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2022-04-09 08:05:24.437][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:24.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2022-04-09 08:05:24.437][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:24.437][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml".
biodb.DEBUG[2022-04-09 08:05:24.437][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:24.452][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:24.452][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:24.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.452][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.452][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.468][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.483][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.499][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.546][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.593][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:24.608][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2022-04-09 08:05:24.608][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:24.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2022-04-09 08:05:24.608][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:24.608][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml".
biodb.DEBUG[2022-04-09 08:05:24.624][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:24.624][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:24.624][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:24.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.624][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.640][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.687][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.702][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.765][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:24.780][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2022-04-09 08:05:24.780][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:24.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2022-04-09 08:05:24.780][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:24.780][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml".
biodb.DEBUG[2022-04-09 08:05:24.780][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:24.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:24.796][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:24.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.796][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.796][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:24.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.890][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.921][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:24.936][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:24.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.952][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:24.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:24.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:24.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.968][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.968][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:24.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:24.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:24.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:24.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:24.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:24.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:24.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.983][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:24.983][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:24.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:24.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:05:25.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:25.030][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:25.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:25.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:25.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:25.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:05:25.061][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:25.061][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:25.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.093][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:25.093][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:25.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d19727a9ac34aca2de50a6f942f16ddf".
biodb.TRACE[2022-04-09 08:05:25.093][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:25.108][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content".
biodb.DEBUG[2022-04-09 08:05:25.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.108][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2022-04-09 08:05:25.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.108][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2022-04-09 08:05:25.108][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:25.124][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml".
biodb.DEBUG[2022-04-09 08:05:25.124][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:25.124][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:25.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.140][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.140][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.140][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.155][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.265][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.280][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2022-04-09 08:05:25.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2022-04-09 08:05:25.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:25.296][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml".
biodb.DEBUG[2022-04-09 08:05:25.296][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.296][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:25.296][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:25.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.327][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.374][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.374][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.390][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.436][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.452][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2022-04-09 08:05:25.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2022-04-09 08:05:25.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:25.452][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml".
biodb.DEBUG[2022-04-09 08:05:25.452][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.468][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:25.468][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:25.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.499][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.515][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.561][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.608][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.624][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2022-04-09 08:05:25.624][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2022-04-09 08:05:25.624][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:25.624][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml".
biodb.DEBUG[2022-04-09 08:05:25.624][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.640][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:25.640][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:25.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.640][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.655][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.655][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.702][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.718][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.780][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.796][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2022-04-09 08:05:25.796][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2022-04-09 08:05:25.796][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:25.796][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml".
biodb.DEBUG[2022-04-09 08:05:25.811][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.811][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:25.811][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:25.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:25.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.874][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.874][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:25.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.921][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.952][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:25.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:25.968][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2022-04-09 08:05:25.968][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:25.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2022-04-09 08:05:25.968][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:25.983][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml".
biodb.DEBUG[2022-04-09 08:05:25.983][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:25.983][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:25.983][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:25.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:25.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:25.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:25.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:25.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:25.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:25.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:25.999][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:25.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.124][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:26.139][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2022-04-09 08:05:26.139][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:26.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2022-04-09 08:05:26.139][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:26.155][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml".
biodb.DEBUG[2022-04-09 08:05:26.155][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:26.155][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:26.155][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:26.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.171][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.171][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.171][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.186][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.218][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.233][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.249][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.249][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.264][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.296][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:26.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.327][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:26.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:26.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:26.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.343][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.343][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.358][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:05:26.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.358][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:26.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:26.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:26.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.374][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.374][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:05:26.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.405][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:26.405][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:26.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:26.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.405][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:26.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.421][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:05:26.421][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:26.421][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:26.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:26.468][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:26.468][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:26.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "bd904440f4fc2972890a98c52c563f7a".
biodb.TRACE[2022-04-09 08:05:26.468][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:26.483][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content".
biodb.DEBUG[2022-04-09 08:05:26.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:26.483][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2022-04-09 08:05:26.483][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:26.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2022-04-09 08:05:26.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:26.499][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml".
biodb.DEBUG[2022-04-09 08:05:26.499][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:26.499][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:26.499][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:26.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.514][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.514][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.530][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.546][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.577][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.593][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.593][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.593][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.608][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.639][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.655][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:26.655][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:26.655][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a7be5ffc012df03c41d74610ef07a76".
biodb.TRACE[2022-04-09 08:05:26.655][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:26.671][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content".
biodb.DEBUG[2022-04-09 08:05:26.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:26.671][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2022-04-09 08:05:26.671][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:26.671][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2022-04-09 08:05:26.671][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:26.686][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml".
biodb.DEBUG[2022-04-09 08:05:26.686][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:26.686][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:26.686][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:26.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.717][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.733][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.749][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.764][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.764][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.780][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.796][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.796][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.796][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.827][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2022-04-09 08:05:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:26.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:26.842][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2022-04-09 08:05:26.842][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:26.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2022-04-09 08:05:26.858][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:26.858][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml".
biodb.DEBUG[2022-04-09 08:05:26.858][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:26.858][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:26.858][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:26.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:26.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:26.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:26.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:26.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:26.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:26.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:26.874][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.874][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.921][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.921][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.921][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.921][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.967][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.014][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:27.030][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2022-04-09 08:05:27.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:27.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2022-04-09 08:05:27.030][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.030][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml".
biodb.DEBUG[2022-04-09 08:05:27.030][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:27.046][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:27.046][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:27.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.046][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.046][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.061][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:27.061][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:27.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.061][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:27.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:27.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:27.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:27.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.077][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:27.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.092][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:27.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:27.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.108][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:27.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:27.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:27.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:27.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.124][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.139][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:27.139][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:27.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.171][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.186][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:27.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.202][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.217][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:05:27.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.233][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.249][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:05:27.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.280][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.280][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.296][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.296][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:05:27.296][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:27.296][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:27.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:27.358][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:27.358][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.358][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:27.358][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:27.358][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.358][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:27.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.389][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:27.389][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.389][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:27.389][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:27.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.405][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.405][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.405][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.421][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.421][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:27.421][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:27.421][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:27.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:27.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.483][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:27.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.483][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:27.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.514][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:27.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.514][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:27.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.561][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:27.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.577][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.592][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:27.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.608][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.624][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.624][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:27.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.655][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.670][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.686][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:27.686][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:27.686][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:27.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:27.717][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.717][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.717][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:27.733][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.733][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:27.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.842][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:27.842][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.842][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:27.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.874][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:27.874][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:27.874][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:27.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:27.874][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:27.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:27.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:27.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.920][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.936][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.936][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:27.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.967][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.967][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:27.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:27.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:27.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:27.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:27.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:27.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:27.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.999][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:27.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:27.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:27.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:27.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:27.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:27.999][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:27.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.014][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.014][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:05:28.030][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:28.030][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:28.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:28.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:28.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "735359865bd435e9a652b6491588c177".
biodb.TRACE[2022-04-09 08:05:28.077][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:28.092][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content".
biodb.DEBUG[2022-04-09 08:05:28.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.124][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2022-04-09 08:05:28.124][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:28.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2022-04-09 08:05:28.124][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:28.139][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml".
biodb.DEBUG[2022-04-09 08:05:28.139][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:28.139][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:28.139][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:28.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.155][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.155][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.155][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.170][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.217][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.233][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.249][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.249][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.280][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.311][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2022-04-09 08:05:28.311][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:28.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2022-04-09 08:05:28.327][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:28.327][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml".
biodb.DEBUG[2022-04-09 08:05:28.327][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:28.342][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:28.342][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:28.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.342][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:28.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.374][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.405][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.420][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.436][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.467][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.483][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2022-04-09 08:05:28.483][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:28.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2022-04-09 08:05:28.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:28.498][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml".
biodb.DEBUG[2022-04-09 08:05:28.498][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:28.498][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:28.498][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:28.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.514][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.530][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.561][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.561][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.592][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.623][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.639][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:28.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.655][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:28.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:28.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:28.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.655][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.670][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.670][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:28.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.686][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:28.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:28.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:28.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.702][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.702][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.702][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:05:28.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.733][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:28.733][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:28.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:28.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.733][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.748][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.748][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:05:28.748][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:28.748][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:28.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:28.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:28.795][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:28.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8a541f1b4956cd259c40c32da3263881".
biodb.TRACE[2022-04-09 08:05:28.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:28.811][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content".
biodb.DEBUG[2022-04-09 08:05:28.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:28.858][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:28.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.873][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:28.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:28.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:28.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.889][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:28.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.905][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:28.905][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:28.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:28.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.920][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.920][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:28.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.952][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:28.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:28.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:28.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.967][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:28.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:28.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:28.983][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:28.983][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:28.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:28.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:28.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:28.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:28.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:28.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:28.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:29.014][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:29.014][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:29.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2ea9078bc4e1650d61bca0cacdbcb041".
biodb.TRACE[2022-04-09 08:05:29.014][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:29.030][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content".
biodb.DEBUG[2022-04-09 08:05:29.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:29.061][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2022-04-09 08:05:29.061][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:29.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2022-04-09 08:05:29.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:29.061][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml".
biodb.DEBUG[2022-04-09 08:05:29.061][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:29.077][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.077][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.077][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.092][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.139][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.217][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:29.233][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2022-04-09 08:05:29.233][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:29.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2022-04-09 08:05:29.233][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:29.233][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml".
biodb.DEBUG[2022-04-09 08:05:29.233][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:29.248][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.248][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.248][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.311][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.327][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.342][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.373][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:29.405][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2022-04-09 08:05:29.405][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:29.405][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2022-04-09 08:05:29.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:29.405][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml".
biodb.DEBUG[2022-04-09 08:05:29.405][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:29.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.420][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.420][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.436][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.436][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.436][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.436][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.483][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.498][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.514][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.545][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:29.576][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2022-04-09 08:05:29.576][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:29.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2022-04-09 08:05:29.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:29.592][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml".
biodb.DEBUG[2022-04-09 08:05:29.592][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:29.592][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.592][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.608][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.608][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.655][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.655][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.655][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.733][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:29.748][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2022-04-09 08:05:29.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:29.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2022-04-09 08:05:29.764][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:29.764][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml".
biodb.DEBUG[2022-04-09 08:05:29.764][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:29.780][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.780][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.780][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.780][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.795][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.795][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.858][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.920][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:29.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:29.936][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2022-04-09 08:05:29.936][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:29.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2022-04-09 08:05:29.936][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:29.936][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml".
biodb.DEBUG[2022-04-09 08:05:29.936][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:29.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:29.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:29.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:29.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:29.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:29.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:29.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:29.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:29.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:29.951][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.967][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:29.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.092][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.108][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2022-04-09 08:05:30.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:30.108][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2022-04-09 08:05:30.108][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.108][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml".
biodb.DEBUG[2022-04-09 08:05:30.108][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:30.123][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:30.123][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:30.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.123][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.155][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.186][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.186][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.201][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.201][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.264][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.280][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2022-04-09 08:05:30.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:30.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2022-04-09 08:05:30.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.280][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml".
biodb.DEBUG[2022-04-09 08:05:30.280][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:30.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:30.295][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:30.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.295][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.358][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.373][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.389][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.420][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.436][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2022-04-09 08:05:30.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:30.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2022-04-09 08:05:30.436][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml".
biodb.DEBUG[2022-04-09 08:05:30.451][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:30.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:30.451][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:30.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.467][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.483][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.592][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.608][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2022-04-09 08:05:30.608][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:30.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2022-04-09 08:05:30.608][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.623][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml".
biodb.DEBUG[2022-04-09 08:05:30.623][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:30.623][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:30.623][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:30.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.654][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.686][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.764][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:30.779][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2022-04-09 08:05:30.779][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:30.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2022-04-09 08:05:30.779][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:30.795][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml".
biodb.DEBUG[2022-04-09 08:05:30.795][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:30.795][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:30.795][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:30.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.826][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.873][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.936][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:30.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:30.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:30.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:30.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:30.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:30.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:30.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:30.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.045][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2022-04-09 08:05:31.045][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:31.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2022-04-09 08:05:31.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.045][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml".
biodb.DEBUG[2022-04-09 08:05:31.045][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:31.061][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:31.061][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:31.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.061][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.076][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.076][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.139][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.139][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.139][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.154][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.201][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.232][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2022-04-09 08:05:31.232][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:31.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2022-04-09 08:05:31.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.232][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml".
biodb.DEBUG[2022-04-09 08:05:31.232][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:31.248][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:31.248][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:31.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.248][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.264][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.264][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.264][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.279][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.279][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.311][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.342][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.389][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.404][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2022-04-09 08:05:31.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:31.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2022-04-09 08:05:31.404][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.404][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml".
biodb.DEBUG[2022-04-09 08:05:31.404][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:31.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:31.420][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:31.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.420][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.436][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.436][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.482][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.514][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.545][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.576][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2022-04-09 08:05:31.576][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:31.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2022-04-09 08:05:31.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml".
biodb.DEBUG[2022-04-09 08:05:31.576][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:31.592][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:31.592][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:31.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.592][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.639][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.654][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.686][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.686][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.717][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:31.732][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:31.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:31.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.732][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:31.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.764][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:31.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.764][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:31.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.779][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.795][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:31.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.811][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:31.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.826][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.826][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:31.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.842][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:31.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:31.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:31.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.857][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.857][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:31.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:31.873][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:31.873][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:31.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:31.920][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:31.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:31.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "73049ee91ee5cceff4f3bc8a5644d766".
biodb.TRACE[2022-04-09 08:05:31.936][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:31.936][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content".
biodb.DEBUG[2022-04-09 08:05:31.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:31.998][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:31.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:31.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:31.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:31.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:31.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:31.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:31.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:31.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.014][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.014][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.029][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:32.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.045][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.061][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.061][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.061][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:05:32.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.092][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.092][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.092][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:05:32.107][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:32.107][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:32.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:32.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d19727a9ac34aca2de50a6f942f16ddf".
biodb.TRACE[2022-04-09 08:05:32.154][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.154][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content".
biodb.DEBUG[2022-04-09 08:05:32.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.264][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:32.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.279][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:05:32.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.310][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.326][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.326][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.342][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:05:32.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.357][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.357][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:05:32.373][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:32.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:32.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:32.420][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.420][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "bd904440f4fc2972890a98c52c563f7a".
biodb.TRACE[2022-04-09 08:05:32.435][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.435][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content".
biodb.DEBUG[2022-04-09 08:05:32.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.451][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a7be5ffc012df03c41d74610ef07a76".
biodb.TRACE[2022-04-09 08:05:32.451][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content".
biodb.DEBUG[2022-04-09 08:05:32.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.498][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:32.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.514][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.514][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.514][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.529][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.529][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:05:32.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.545][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.560][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:05:32.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.592][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.592][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.592][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.592][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:05:32.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:32.607][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:32.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:32.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.670][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:32.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.670][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:32.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.670][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:32.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.685][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:32.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.701][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:32.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.701][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:32.701][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:32.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.717][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:32.748][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:32.748][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:32.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:32.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:32.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.795][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:32.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:32.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:32.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:32.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:32.826][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:32.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:32.873][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:32.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.889][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.889][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.904][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.904][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:32.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.935][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.935][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.935][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:32.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.967][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:32.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:32.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:32.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.982][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:32.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:32.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:32.998][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:32.998][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:32.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:32.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:32.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:32.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:32.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:32.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:32.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:33.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:33.029][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:33.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:33.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:33.045][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:33.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:33.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:33.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:33.154][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:33.154][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:33.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.185][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:33.185][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:33.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:33.185][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:33.185][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:33.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.217][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:33.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.232][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.248][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:33.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.279][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:33.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.310][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.326][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.326][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.342][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:05:33.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:33.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:33.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:33.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:33.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:33.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "735359865bd435e9a652b6491588c177".
biodb.TRACE[2022-04-09 08:05:33.388][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:33.388][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content".
biodb.DEBUG[2022-04-09 08:05:33.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.498][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:33.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.498][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.513][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.513][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:33.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.545][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.545][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.560][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:05:33.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.576][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.592][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:05:33.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:33.607][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:33.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:33.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:33.654][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:33.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8a541f1b4956cd259c40c32da3263881".
biodb.TRACE[2022-04-09 08:05:33.654][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:33.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content".
biodb.DEBUG[2022-04-09 08:05:33.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.701][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:33.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.717][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:33.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.748][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.763][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:33.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.795][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:33.795][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:33.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:33.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.795][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.810][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:05:33.810][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:33.810][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:33.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:33.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:33.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:33.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2ea9078bc4e1650d61bca0cacdbcb041".
biodb.TRACE[2022-04-09 08:05:33.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:33.857][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content".
biodb.DEBUG[2022-04-09 08:05:33.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:33.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:33.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:33.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:33.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:33.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:33.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:33.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:34.232][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:34.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:34.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:34.232][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:34.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.248][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:34.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.263][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:34.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:34.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:34.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.279][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.279][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:34.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.310][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:34.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:34.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:34.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.326][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:05:34.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.341][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:34.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:34.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:34.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.357][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:34.373][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:34.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:34.466][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:34.466][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:34.466][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:05:34.466][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:34.466][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:05:34.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:34.560][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2022-04-09 08:05:34.560][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:34.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2022-04-09 08:05:34.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:34.560][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml".
biodb.DEBUG[2022-04-09 08:05:34.576][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:34.576][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:34.576][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:34.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.638][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.654][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.716][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:34.732][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2022-04-09 08:05:34.732][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:34.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2022-04-09 08:05:34.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:34.748][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml".
biodb.DEBUG[2022-04-09 08:05:34.748][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:34.748][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:34.748][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:34.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.763][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.779][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:34.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:34.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.779][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:34.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:34.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:34.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:34.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.857][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.904][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:34.904][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:34.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.919][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:34.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:34.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:34.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.935][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.935][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:34.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.966][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:34.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:34.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:34.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.966][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:34.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:34.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:34.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:34.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:34.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:34.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:34.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:34.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:34.998][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:34.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:34.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:34.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.013][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:05:35.029][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:35.029][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:35.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:35.076][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:35.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d5104bb979c9ec31aa9634ac7a986155".
biodb.TRACE[2022-04-09 08:05:35.076][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:35.076][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content".
biodb.DEBUG[2022-04-09 08:05:35.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.091][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2022-04-09 08:05:35.091][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:35.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2022-04-09 08:05:35.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:35.107][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml".
biodb.DEBUG[2022-04-09 08:05:35.107][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:35.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:35.107][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:35.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.154][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.169][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.201][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.201][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.248][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.279][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2022-04-09 08:05:35.279][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:35.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2022-04-09 08:05:35.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:35.294][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml".
biodb.DEBUG[2022-04-09 08:05:35.294][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:35.294][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:35.294][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:35.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.310][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.357][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.357][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.404][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.451][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.466][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:35.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.482][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:35.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:35.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:35.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.498][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.498][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.513][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:05:35.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.513][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:35.513][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:35.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:35.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.529][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.529][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:35.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.560][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:35.560][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:35.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:35.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:35.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.576][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:35.576][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:35.591][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:35.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:35.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:35.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "beb9d154bf0d4e4f372dd6176fab59e2".
biodb.TRACE[2022-04-09 08:05:35.638][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:35.638][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content".
biodb.DEBUG[2022-04-09 08:05:35.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.654][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2022-04-09 08:05:35.654][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:35.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2022-04-09 08:05:35.654][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:35.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml".
biodb.DEBUG[2022-04-09 08:05:35.654][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:35.669][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:35.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:35.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.669][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.748][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.748][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.794][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.810][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2022-04-09 08:05:35.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:35.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2022-04-09 08:05:35.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:35.826][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml".
biodb.DEBUG[2022-04-09 08:05:35.826][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:35.826][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:35.826][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:35.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:35.841][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:35.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:35.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:35.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:35.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.966][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:35.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:35.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:35.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:35.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:35.982][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2022-04-09 08:05:35.982][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:35.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2022-04-09 08:05:35.982][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:35.997][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml".
biodb.DEBUG[2022-04-09 08:05:35.997][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:35.997][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:35.997][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:35.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:35.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:35.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:35.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:35.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.029][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:36.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:36.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:36.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:36.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.138][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.154][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2022-04-09 08:05:36.154][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:36.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2022-04-09 08:05:36.154][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:36.169][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml".
biodb.DEBUG[2022-04-09 08:05:36.169][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:36.169][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:36.169][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:36.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.201][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:36.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:36.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:36.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.263][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.279][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.310][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2022-04-09 08:05:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.341][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:36.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.357][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.357][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.372][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:05:36.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.388][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.388][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.404][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.404][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:05:36.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.435][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.435][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.435][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.451][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:05:36.451][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:36.451][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:36.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:36.513][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:36.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:36.513][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:36.513][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:36.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:36.513][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:36.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:36.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:36.529][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:36.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.576][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:36.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.576][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.591][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:36.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.622][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.622][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.638][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:36.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.654][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.669][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:36.685][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:36.685][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:36.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:36.732][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:36.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:36.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:36.732][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:36.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.779][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:36.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.794][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.794][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.810][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.810][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:36.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.825][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.841][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.841][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.857][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:36.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.872][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:36.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:36.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:36.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.872][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:36.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.888][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:36.888][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:36.888][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:36.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:36.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:36.950][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:36.950][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:36.950][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:36.950][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:36.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:36.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:36.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:36.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:36.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:36.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:36.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:36.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:36.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.013][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:37.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.013][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:37.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.044][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:37.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.044][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.060][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.075][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:05:37.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.075][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:37.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:37.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:37.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.091][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.091][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:37.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:05:37.107][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:37.107][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:37.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:37.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:37.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:37.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "460e5a713fddea0c2866dcbc892dfc2b".
biodb.TRACE[2022-04-09 08:05:37.169][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:37.169][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content".
biodb.DEBUG[2022-04-09 08:05:37.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:37.200][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2022-04-09 08:05:37.216][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:37.216][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2022-04-09 08:05:37.216][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:37.216][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml".
biodb.DEBUG[2022-04-09 08:05:37.216][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:37.232][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:37.232][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:37.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.232][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.279][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.279][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.294][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.325][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.372][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:37.388][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2022-04-09 08:05:37.388][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:37.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2022-04-09 08:05:37.388][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:37.388][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml".
biodb.DEBUG[2022-04-09 08:05:37.388][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:37.404][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:37.404][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:37.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.404][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.419][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.419][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.482][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.544][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:37.560][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2022-04-09 08:05:37.560][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:37.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2022-04-09 08:05:37.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:37.575][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml".
biodb.DEBUG[2022-04-09 08:05:37.575][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:37.575][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:37.575][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:37.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.716][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:37.732][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2022-04-09 08:05:37.732][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:37.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2022-04-09 08:05:37.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:37.747][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml".
biodb.DEBUG[2022-04-09 08:05:37.747][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:37.747][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:37.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:37.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.763][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.810][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.857][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.903][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:37.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:37.919][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2022-04-09 08:05:37.919][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:37.919][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2022-04-09 08:05:37.919][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:37.919][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml".
biodb.DEBUG[2022-04-09 08:05:37.919][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:37.935][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:37.935][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:37.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:37.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:37.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:37.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:37.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:37.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:37.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:37.935][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.950][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.950][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:37.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.982][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:37.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:37.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.060][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.091][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:38.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.107][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:38.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.107][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.122][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:38.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.138][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:38.138][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.138][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:38.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.185][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:38.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:38.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:38.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:38.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:38.216][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:38.216][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:38.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:38.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:38.263][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0908e22233c03290fae8e61cbb27ce42".
biodb.TRACE[2022-04-09 08:05:38.263][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.263][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content".
biodb.DEBUG[2022-04-09 08:05:38.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.310][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2022-04-09 08:05:38.310][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:38.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2022-04-09 08:05:38.310][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.310][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml".
biodb.DEBUG[2022-04-09 08:05:38.310][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:38.325][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:38.325][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:38.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.325][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.341][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.341][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.357][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.466][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.482][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2022-04-09 08:05:38.482][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:38.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2022-04-09 08:05:38.482][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml".
biodb.DEBUG[2022-04-09 08:05:38.482][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:38.497][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:38.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:38.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.497][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.513][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.513][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.560][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.560][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.575][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.638][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.653][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2022-04-09 08:05:38.653][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:38.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2022-04-09 08:05:38.653][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.653][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml".
biodb.DEBUG[2022-04-09 08:05:38.653][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:38.669][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:38.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:38.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.669][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.747][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.747][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.747][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.794][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.810][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2022-04-09 08:05:38.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:38.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2022-04-09 08:05:38.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.825][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml".
biodb.DEBUG[2022-04-09 08:05:38.825][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:38.825][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:38.825][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:38.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:38.841][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.841][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.888][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.903][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.966][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:38.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:38.981][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2022-04-09 08:05:38.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:38.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2022-04-09 08:05:38.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:38.981][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml".
biodb.DEBUG[2022-04-09 08:05:38.997][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:38.997][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:38.997][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:38.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:38.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:38.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:38.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:38.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:38.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:38.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.075][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.075][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.138][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.153][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2022-04-09 08:05:39.153][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:39.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2022-04-09 08:05:39.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:39.153][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml".
biodb.DEBUG[2022-04-09 08:05:39.153][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:39.169][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:39.169][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:39.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.169][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.185][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.247][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.247][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.310][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.325][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2022-04-09 08:05:39.325][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:39.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2022-04-09 08:05:39.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:39.341][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml".
biodb.DEBUG[2022-04-09 08:05:39.341][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:39.341][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:39.341][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:39.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.481][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.497][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2022-04-09 08:05:39.497][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:39.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2022-04-09 08:05:39.497][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:39.513][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml".
biodb.DEBUG[2022-04-09 08:05:39.513][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:39.513][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:39.513][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:39.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.559][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.606][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.653][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.669][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2022-04-09 08:05:39.669][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:39.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2022-04-09 08:05:39.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:39.669][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml".
biodb.DEBUG[2022-04-09 08:05:39.669][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:39.684][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:39.684][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:39.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.747][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.809][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.825][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2022-04-09 08:05:39.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:39.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2022-04-09 08:05:39.825][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:39.825][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml".
biodb.DEBUG[2022-04-09 08:05:39.841][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:39.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:39.841][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:39.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.888][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.903][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.934][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.966][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:39.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:39.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:39.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:39.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:39.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:39.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:39.981][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2022-04-09 08:05:39.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:39.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2022-04-09 08:05:39.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:39.997][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml".
biodb.DEBUG[2022-04-09 08:05:39.997][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:39.997][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:39.997][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:39.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:39.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:39.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:39.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.028][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.059][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.075][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.138][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:40.153][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2022-04-09 08:05:40.153][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:40.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2022-04-09 08:05:40.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:40.169][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml".
biodb.DEBUG[2022-04-09 08:05:40.169][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:40.169][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:40.169][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:40.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.309][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:40.325][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2022-04-09 08:05:40.325][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:40.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2022-04-09 08:05:40.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:40.325][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml".
biodb.DEBUG[2022-04-09 08:05:40.325][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:40.341][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:40.341][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:40.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.341][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.356][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.388][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.481][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:40.497][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2022-04-09 08:05:40.497][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:40.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2022-04-09 08:05:40.497][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:40.497][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml".
biodb.DEBUG[2022-04-09 08:05:40.497][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:40.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:40.512][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:40.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.512][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.528][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.528][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.559][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.606][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.653][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:40.669][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2022-04-09 08:05:40.669][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:40.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2022-04-09 08:05:40.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:40.669][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml".
biodb.DEBUG[2022-04-09 08:05:40.669][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:40.684][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:40.684][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:40.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.684][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.700][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.747][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.762][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.762][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.762][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.825][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:40.841][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2022-04-09 08:05:40.841][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:40.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2022-04-09 08:05:40.841][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:40.841][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml".
biodb.DEBUG[2022-04-09 08:05:40.841][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:40.856][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:40.856][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:40.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:40.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:40.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:40.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:40.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:40.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:40.856][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.872][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.872][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:40.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.903][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.950][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.997][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:40.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:40.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.012][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2022-04-09 08:05:41.012][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:41.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2022-04-09 08:05:41.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:41.012][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml".
biodb.DEBUG[2022-04-09 08:05:41.012][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:41.028][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:41.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:41.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:41.028][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.044][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.044][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.122][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.153][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.169][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2022-04-09 08:05:41.184][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:41.184][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2022-04-09 08:05:41.184][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:41.184][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml".
biodb.DEBUG[2022-04-09 08:05:41.184][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:41.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:41.200][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:41.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.262][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.294][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.341][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.356][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2022-04-09 08:05:41.356][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:41.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2022-04-09 08:05:41.356][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:41.356][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml".
biodb.DEBUG[2022-04-09 08:05:41.356][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:41.372][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:41.372][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:41.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:41.372][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.387][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.387][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.387][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.387][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.512][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.528][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2022-04-09 08:05:41.528][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:41.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2022-04-09 08:05:41.528][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:41.528][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml".
biodb.DEBUG[2022-04-09 08:05:41.528][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:41.544][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:41.544][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:41.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:41.544][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.622][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.637][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.669][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2022-04-09 08:05:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.684][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2022-04-09 08:05:41.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:41.700][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2022-04-09 08:05:41.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:41.700][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml".
biodb.DEBUG[2022-04-09 08:05:41.700][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:41.715][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:41.715][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:41.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:41.715][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.778][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.794][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.856][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:41.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:41.872][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2022-04-09 08:05:41.872][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:41.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2022-04-09 08:05:41.872][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:41.872][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml".
biodb.DEBUG[2022-04-09 08:05:41.872][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:41.887][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:41.887][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:41.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:41.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:41.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:41.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:41.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:41.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:41.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:41.887][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:41.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.903][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:41.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.950][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.965][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.981][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.981][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.012][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.028][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2022-04-09 08:05:42.028][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:42.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2022-04-09 08:05:42.044][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:42.044][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml".
biodb.DEBUG[2022-04-09 08:05:42.044][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:42.044][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:42.059][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:42.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.059][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.137][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.184][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.200][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2022-04-09 08:05:42.200][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:42.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2022-04-09 08:05:42.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:42.215][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml".
biodb.DEBUG[2022-04-09 08:05:42.215][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:42.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:42.215][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:42.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.231][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.231][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.231][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.247][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.262][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.309][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.309][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.309][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.356][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.372][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2022-04-09 08:05:42.372][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:42.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2022-04-09 08:05:42.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:42.387][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml".
biodb.DEBUG[2022-04-09 08:05:42.387][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:42.387][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:42.387][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:42.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.418][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.450][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.465][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.481][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.497][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.528][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2022-04-09 08:05:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.543][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2022-04-09 08:05:42.543][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:05:42.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2022-04-09 08:05:42.559][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:42.559][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml".
biodb.DEBUG[2022-04-09 08:05:42.559][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:05:42.559][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:05:42.575][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:05:42.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.575][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:42.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.606][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:42.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.653][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.653][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.653][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.653][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.700][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.747][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:42.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.762][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:42.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:42.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:42.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.762][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.778][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:42.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.793][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:42.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:42.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:42.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.809][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.809][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:42.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.840][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:42.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:42.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:42.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.840][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.856][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:42.856][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:42.856][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:42.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:42.903][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:42.903][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:42.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:05:42.918][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:42.918][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:05:42.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:42.981][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:42.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:42.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:42.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:42.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:42.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:42.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:42.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.997][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:42.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:42.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:42.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.997][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:42.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:42.997][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:43.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.028][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.043][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.043][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.059][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:43.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.059][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.075][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:43.090][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:43.090][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:43.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:43.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:43.153][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:43.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:05:43.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:43.153][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:05:43.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.262][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:43.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.278][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.278][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.278][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:43.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.309][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.325][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.325][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:43.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.356][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.356][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.356][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:05:43.371][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:43.371][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:43.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:43.418][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:43.418][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:43.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d5104bb979c9ec31aa9634ac7a986155".
biodb.TRACE[2022-04-09 08:05:43.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:43.418][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content".
biodb.DEBUG[2022-04-09 08:05:43.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.481][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:43.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.496][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.512][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.512][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:05:43.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.543][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.543][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.559][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:43.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.575][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.590][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:05:43.606][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:43.606][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:43.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:43.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:43.653][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:43.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "beb9d154bf0d4e4f372dd6176fab59e2".
biodb.TRACE[2022-04-09 08:05:43.653][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:43.653][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content".
biodb.DEBUG[2022-04-09 08:05:43.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:43.825][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:43.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.840][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.856][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.856][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:05:43.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.887][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.887][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.887][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.887][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.887][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:05:43.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.918][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:43.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:43.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:43.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.934][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:43.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.934][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:43.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:05:43.934][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:43.950][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:43.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:43.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:43.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:43.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:43.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:43.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:43.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:43.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:43.996][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:43.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:43.996][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:43.996][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:43.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:43.996][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:44.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:44.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:44.012][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:44.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.059][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:44.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.075][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.090][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:44.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.106][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.106][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.121][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:44.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.137][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.137][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:44.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:44.168][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:44.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:44.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:44.215][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:44.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:44.215][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:44.215][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:44.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.262][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:44.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.278][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.293][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:44.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.309][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:44.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.356][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.356][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:44.371][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:44.371][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:44.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:44.418][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:44.418][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:44.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:44.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:44.418][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:44.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.481][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:44.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.481][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.496][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:44.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.528][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.528][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.543][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:05:44.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.559][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.559][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.574][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.574][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:05:44.590][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:44.590][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:44.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:44.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:44.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:44.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "460e5a713fddea0c2866dcbc892dfc2b".
biodb.TRACE[2022-04-09 08:05:44.637][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:44.637][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content".
biodb.DEBUG[2022-04-09 08:05:44.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.762][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:44.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.778][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.793][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.793][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:05:44.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.809][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.824][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:05:44.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.856][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:44.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:44.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:44.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.856][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.871][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.871][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:05:44.871][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:44.871][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:44.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:44.918][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:44.918][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:44.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0908e22233c03290fae8e61cbb27ce42".
biodb.TRACE[2022-04-09 08:05:44.918][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:44.934][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content".
biodb.DEBUG[2022-04-09 08:05:44.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:44.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:44.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:44.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:44.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:44.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:44.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:44.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.371][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:45.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.387][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:45.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:45.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:45.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.402][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.402][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:05:45.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.434][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:45.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:45.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:45.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.434][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.434][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:05:45.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.465][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:45.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:45.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:45.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.481][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.481][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:05:45.496][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:45.496][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:45.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:45.543][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:45.543][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:45.543][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:05:45.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:45.543][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:05:45.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.606][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:45.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.621][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:45.621][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:45.621][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:45.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.621][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.637][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:05:45.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.652][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:45.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:45.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:45.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.668][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:05:45.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.699][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:45.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:45.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:45.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.699][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.699][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:05:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.715][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:05:45.715][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:45.715][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:45.731][biodb::testThat] 
biodb.INFO [2022-04-09 08:05:45.746][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-04-09 08:05:45.746][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:05:45.746][biodb::testThat] 
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:45.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:45.824][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:45.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:45.840][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:45.840][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:45.840][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:45.840][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:45.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:45.840][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:45.840][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:45.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:45.856][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:45.856][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:45.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:45.871][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:45.871][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:45.871][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:45.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:45.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:45.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:45.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:45.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:45.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:45.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:45.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.949][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:45.949][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:45.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:45.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:45.949][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:45.949][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:45.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:45.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:45.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.027][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.027][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.059][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:05:46.184][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:46.184][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:46.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:46.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:46.230][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:46.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:46.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:46.230][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:46.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.262][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:46.262][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:46.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:46.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:46.277][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:46.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:46.324][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:46.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.402][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.402][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:46.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:46.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:46.402][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.402][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.402][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.480][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.480][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.512][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.512][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:46.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.715][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.715][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:46.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:46.715][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:46.715][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.715][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.715][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.715][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.793][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.793][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.793][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.840][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.949][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:46.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:46.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:46.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:46.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:46.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:46.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:46.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:46.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.027][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.027][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:47.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:47.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:47.027][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.090][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.105][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:47.105][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.105][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.137][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:47.246][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:47.246][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:47.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:47.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:47.293][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:47.293][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:47.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:47.293][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:47.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.402][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:47.402][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:47.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:47.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:47.418][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:47.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.449][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:47.449][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:47.449][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:47.449][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:47.449][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:47.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:47.480][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:47.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.574][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.574][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:47.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:47.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:47.574][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.652][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.652][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.652][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.683][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:47.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:05:47.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:47.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:47.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:47.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:47.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:47.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:47.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.886][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.886][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:47.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:47.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:47.886][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:47.886][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.886][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.918][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.933][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.965][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:47.965][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.980][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.996][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.996][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:05:48.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.183][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.183][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:48.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:48.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:48.183][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.183][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.199][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.261][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.261][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.293][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.308][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:05:48.418][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:48.418][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:48.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:48.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:48.465][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:48.465][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:05:48.465][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:48.465][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:05:48.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:48.480][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:48.480][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:05:48.480][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:48.480][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:05:48.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.496][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:48.496][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:48.496][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:05:48.511][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:48.511][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:05:48.511][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:48.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.590][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.590][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:48.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:48.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:48.590][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.590][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.668][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.668][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.683][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.714][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.824][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:05:48.839][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:48.839][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:48.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:48.871][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:48.871][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:48.871][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:05:48.886][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:48.886][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:05:48.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.918][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:48.918][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:48.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:05:48.918][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:48.918][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:05:48.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:48.964][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:48.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:48.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:48.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:48.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:48.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:48.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:48.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.058][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.058][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:49.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:49.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:49.058][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.121][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.136][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.136][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.152][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.183][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.183][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:49.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.386][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.386][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:49.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:49.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:49.386][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.418][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.464][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.464][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.496][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:49.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.714][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.714][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:49.714][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:49.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:49.714][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.777][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.792][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:49.792][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.824][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.824][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:49.933][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:49.933][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:49.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:49.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:49.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:49.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:05:49.996][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:49.996][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:05:49.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:49.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:49.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:49.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:49.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:49.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:49.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.105][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:50.105][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:50.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:05:50.105][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:50.105][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:05:50.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.136][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:50.136][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:50.136][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:05:50.136][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:50.136][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:05:50.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:50.167][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:50.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.261][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.261][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:50.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:50.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:50.261][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.261][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.261][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.261][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.292][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.339][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.339][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.339][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.386][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:05:50.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.589][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.589][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:50.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:50.589][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:50.589][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.589][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.589][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.589][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.667][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:50.667][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.714][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.824][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:05:50.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:50.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:50.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:50.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:50.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:50.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:50.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.902][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.902][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:50.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:50.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:50.902][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.902][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.995][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.995][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:50.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.027][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:51.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:05:51.152][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:51.152][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:51.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:51.230][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:51.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:51.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:51.245][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:51.245][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:51.245][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:51.245][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:51.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:51.245][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:51.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:51.292][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:51.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.370][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.370][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:51.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:51.370][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:51.370][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.370][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.370][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.449][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.449][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.449][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.495][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:05:51.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.683][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.683][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:51.683][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:51.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:51.698][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.714][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.730][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.761][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.761][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.761][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.808][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:05:51.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:51.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:51.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:51.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:51.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:51.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:51.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:51.995][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:51.995][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:51.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:51.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:52.011][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.027][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.073][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:52.089][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.120][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:05:52.230][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:52.230][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:52.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:52.261][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:52.261][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:52.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:52.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:52.277][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:52.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:52.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:52.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:52.323][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:52.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.401][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:52.401][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:52.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:52.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:52.401][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:52.401][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.401][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.401][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.417][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.464][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.480][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:52.480][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.526][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:52.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.730][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:52.730][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:52.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:52.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:52.730][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.730][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.761][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.808][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:52.808][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.839][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:52.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:52.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:52.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:52.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:52.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:52.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:52.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.026][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.026][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:53.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:53.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:53.026][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.026][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.026][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.026][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.042][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.105][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:53.105][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.136][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.245][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:05:53.245][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:53.245][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:53.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:53.292][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:53.292][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:53.292][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:53.292][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:53.292][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:53.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:53.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:53.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:53.339][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:53.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.433][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.433][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:53.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:53.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:53.433][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.433][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.448][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.495][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.511][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.542][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:05:53.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.745][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.745][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:53.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:53.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:53.745][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.745][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.776][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.823][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:53.823][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.854][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:05:53.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:53.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:53.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:53.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:53.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:53.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:53.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.042][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.042][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:54.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:54.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:54.042][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.042][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.073][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.089][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.104][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.120][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:54.120][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.136][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.151][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:54.261][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:54.261][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:54.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:54.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:54.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:54.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:05:54.323][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:54.323][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:05:54.323][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:54.323][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:54.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:05:54.323][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:54.323][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:05:54.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:54.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:54.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:54.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:54.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.464][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.464][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:54.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:54.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:54.464][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.511][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.526][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.542][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.542][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.589][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:05:54.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:54.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:54.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:54.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:54.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:54.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:54.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.792][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.792][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:54.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:54.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:54.792][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.792][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.823][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.854][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.870][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.870][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.886][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:54.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.917][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:05:55.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.120][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.120][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:55.120][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:55.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:55.120][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.182][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.198][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:55.198][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.214][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.229][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:05:55.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:55.339][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:55.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:55.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:55.385][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:55.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:05:55.385][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:55.385][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:05:55.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:55.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:55.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:55.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:55.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.526][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.526][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:55.526][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:55.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:55.526][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.526][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.589][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.620][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.620][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.651][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.776][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:55.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:55.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:55.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:55.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:55.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:55.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:55.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.854][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.854][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:55.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:55.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:55.854][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:55.854][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.870][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.885][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.948][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:55.948][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:55.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:55.979][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:55.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.979][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:56.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.167][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.167][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:56.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:56.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:56.167][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.198][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.245][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.260][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:56.260][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.276][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.292][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.292][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.292][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:05:56.401][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:56.401][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:05:56.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:56.448][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:05:56.448][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:05:56.448][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:05:56.448][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:05:56.448][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:05:56.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:56.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:56.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:05:56.495][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:05:56.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.588][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.588][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:56.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:56.588][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:56.588][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.667][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.667][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.698][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.698][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:05:56.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:56.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:56.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:56.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:56.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:56.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:56.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:56.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.901][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.917][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:56.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:56.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:56.917][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.948][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:56.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.995][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:56.995][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:56.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.026][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.026][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:57.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:05:57.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:05:57.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:57.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:57.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:57.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:57.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:57.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.229][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:57.229][private$selectFields] 
biodb.TRACE[2022-04-09 08:05:57.229][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:05:57.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:05:57.229][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.260][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.307][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:57.307][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.338][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:05:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:05:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:05:57.448][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:05:57.448][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:05:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:05:57.463][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-09 08:05:57.463][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-09 08:05:57.463][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-09 08:05:57.463][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-09 08:05:57.463][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:57.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:57.479][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:57.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:57.479][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:57.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1208 ]
> 
> proc.time()
   user  system elapsed 
  49.85    0.92   54.26

biodbChebi.Rcheck/tests_x64/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

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You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-04-09 08:05:59.526][biodb::testContext] 
biodb.INFO [2022-04-09 08:05:59.526][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:05:59.526][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-04-09 08:05:59.526][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-09 08:05:59.526][biodb::testContext] 
biodb.INFO [2022-04-09 08:05:59.541][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2022-04-09 08:05:59.541][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-09 08:05:59.541][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:05:59.541][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-09 08:05:59.541][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-09 08:05:59.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.557][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-09 08:05:59.557][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-09 08:05:59.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.572][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-09 08:05:59.572][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-09 08:05:59.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.572][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-09 08:05:59.572][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-09 08:05:59.572][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-09 08:05:59.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.572][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-09 08:05:59.572][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-09 08:05:59.572][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-09 08:05:59.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.588][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-09 08:05:59.588][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-09 08:05:59.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.588][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-09 08:05:59.588][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-09 08:05:59.588][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-09 08:05:59.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.588][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-09 08:05:59.588][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-09 08:05:59.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.588][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-09 08:05:59.588][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-09 08:05:59.588][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-09 08:05:59.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.604][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:05:59.604][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-09 08:05:59.604][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-09 08:05:59.604][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-09 08:05:59.604][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-09 08:05:59.604][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-09 08:05:59.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.604][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-09 08:05:59.604][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-09 08:05:59.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.604][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-09 08:05:59.619][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-09 08:05:59.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.619][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-09 08:05:59.619][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-09 08:05:59.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.619][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-09 08:05:59.619][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-09 08:05:59.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.635][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-09 08:05:59.635][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-09 08:05:59.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.635][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-09 08:05:59.635][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-09 08:05:59.635][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-09 08:05:59.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.635][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-09 08:05:59.635][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-09 08:05:59.635][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-09 08:05:59.666][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.666][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:59.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.697][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:59.697][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.697][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:59.697][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:59.713][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.713][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.713][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:59.729][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.729][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.744][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:59.744][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.744][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.744][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:05:59.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:05:59.760][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-09 08:05:59.760][self$setPropertyValue] 
biodb.DEBUG[2022-04-09 08:05:59.775][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.838][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-09 08:05:59.838][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-09 08:05:59.838][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-09 08:05:59.838][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-09 08:05:59.838][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:05:59.838][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:05:59.854][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-09 08:05:59.869][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-09 08:05:59.885][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-09 08:05:59.900][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-09 08:05:59.916][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-09 08:05:59.932][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-09 08:05:59.932][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-09 08:05:59.932][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-09 08:05:59.932][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-09 08:05:59.932][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-09 08:05:59.932][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-09 08:05:59.932][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-09 08:05:59.932][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-09 08:05:59.947][initialize] This is biodb version 1.2.1.
biodb.DEBUG[2022-04-09 08:05:59.947][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:00.041][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-09 08:06:00.041][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-09 08:06:00.041][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:00.041][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-09 08:06:00.041][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:00.041][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-09 08:06:00.041][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:00.041][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-09 08:06:00.041][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:00.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-09 08:06:00.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-09 08:06:00.057][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-09 08:06:00.057][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-09 08:06:00.072][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-09 08:06:00.072][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-09 08:06:00.072][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-09 08:06:00.072][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-09 08:06:00.072][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-09 08:06:00.072][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-09 08:06:00.072][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-09 08:06:00.072][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-09 08:06:00.088][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-09 08:06:00.088][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-09 08:06:00.088][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-09 08:06:00.104][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-09 08:06:00.104][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:06:00.104][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-09 08:06:00.104][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-09 08:06:00.104][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-09 08:06:00.119][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:00.119][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-04-09 08:06:00.119][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:00.119][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:00.119][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-04-09 08:06:00.135][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:00.135][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:00.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.150][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.150][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.166][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.197][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.229][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.338][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.479][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.510][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.541][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.541][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.557][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.557][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.572][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.588][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.619][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.635][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.682][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.697][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.760][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.791][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2022-04-09 08:06:00.807][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:00.822][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:00.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:00.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:00.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:00.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:00.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:00.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:00.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:00.822][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.822][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.838][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.853][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.885][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.885][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.900][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:00.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:00.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.916][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.916][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:00.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:00.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.916][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.932][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.932][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:00.978][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:00.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.088][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.135][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.150][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.150][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.166][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:01.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.182][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.197][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.213][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.213][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.228][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.260][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.291][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.338][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.369][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.385][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.400][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2022-04-09 08:06:01.400][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:01.400][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:01.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:01.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:01.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:01.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:01.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:01.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:01.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.416][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.432][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.432][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.447][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.463][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.463][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.463][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:01.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.494][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.494][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.494][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:01.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.510][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.510][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.510][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:01.556][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.650][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.650][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.666][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.697][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.697][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.713][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.744][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.775][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.791][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.791][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.791][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.806][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.838][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.853][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.853][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:01.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:01.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.916][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:01.916][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:01.916][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-09 08:06:01.916][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:01.916][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:06:01.916][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2022-04-09 08:06:01.916][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-09 08:06:01.931][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2022-04-09 08:06:01.931][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-04-09 08:06:01.931][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-04-09 08:06:01.931][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:01.947][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-04-09 08:06:01.947][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:01.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:01.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:01.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:01.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:01.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:01.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:01.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:01.947][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.947][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:01.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.963][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.963][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.963][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:01.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:01.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:01.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:01.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:01.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:01.994][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.010][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.010][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.041][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.041][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.041][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:02.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:02.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:02.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:02.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:02.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:02.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:02.088][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.088][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.103][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:02.103][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:02.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:02.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.119][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.135][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.150][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.150][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.166][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.166][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:02.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:02.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:02.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:02.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:02.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:02.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:02.228][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.244][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.275][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.291][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.291][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.291][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.306][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.306][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:02.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.322][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.385][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-09 08:06:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-09 08:06:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:02.431][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.431][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-09 08:06:02.431][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:02.431][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:02.431][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.431][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.447][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-04-09 08:06:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.463][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-04-09 08:06:02.478][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-09 08:06:02.478][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:02.494][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-09 08:06:02.494][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:02.494][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-09 08:06:02.509][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:02.509][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:02.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:02.509][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:02.525][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:06:02.525][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-04-09 08:06:02.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:02.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.525][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.541][ef$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:02.541][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.541][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-04-09 08:06:02.541][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:02.541][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:02.588][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:02.588][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:02.588][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:02.588][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:02.603][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-04-09 08:06:02.603][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.603][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-04-09 08:06:02.603][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:02.603][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-09 08:06:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:02.697][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-09 08:06:02.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:02.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:02.697][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.713][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:02.713][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-09 08:06:02.713][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:02.713][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:06:02.713][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-04-09 08:06:03.775][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-04-09 08:06:04.978][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:04.978][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-09 08:06:04.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:04.978][biodb::testThat] 
biodb.DEBUG[2022-04-09 08:06:05.462][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-04-09 08:06:05.947][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:05.947][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-04-09 08:06:05.947][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:05.947][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:05.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:05.993][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:05.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:05.993][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:05.993][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:06:05.993][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:05.993][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:05.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:05.993][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.009][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.056][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:06.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:06.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:06.056][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.056][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:06.056][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:06.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:06.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:06.056][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.072][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:06.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:06.087][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:06.103][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:06.103][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.103][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:06.103][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:06.118][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:06.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:06.118][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.118][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:06:06.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:06.150][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-04-09 08:06:06.181][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:06.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-04-09 08:06:06.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.181][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2022-04-09 08:06:06.181][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:06.196][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.196][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.196][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.228][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.243][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.290][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:06.321][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-04-09 08:06:06.321][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:06.321][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-04-09 08:06:06.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.321][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2022-04-09 08:06:06.321][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:06.337][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.337][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.337][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.384][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.384][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.400][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.431][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:06.462][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-04-09 08:06:06.462][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:06.462][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-04-09 08:06:06.462][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.462][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2022-04-09 08:06:06.462][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:06.462][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.462][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.478][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.478][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.509][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.525][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.525][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.571][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:06.587][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-04-09 08:06:06.587][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:06.587][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-04-09 08:06:06.587][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.587][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2022-04-09 08:06:06.587][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:06.603][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.603][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.618][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.650][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.665][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.712][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.743][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:06.759][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-04-09 08:06:06.759][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:06.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-04-09 08:06:06.775][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.775][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2022-04-09 08:06:06.775][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:06.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.790][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.790][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.853][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.915][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:06.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:06.931][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-04-09 08:06:06.931][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:06.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-04-09 08:06:06.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:06.931][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2022-04-09 08:06:06.931][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:06.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:06.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:06.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:06.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:06.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:06.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:06.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:06.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:06.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:06.946][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.978][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.009][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.025][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.071][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.087][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-04-09 08:06:07.087][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-04-09 08:06:07.087][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:07.087][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2022-04-09 08:06:07.087][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:07.103][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:07.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:07.103][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.103][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.134][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.165][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.228][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.243][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-04-09 08:06:07.243][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-04-09 08:06:07.243][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:07.243][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2022-04-09 08:06:07.243][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.259][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:07.259][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:07.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:07.259][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.321][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.321][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.337][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.353][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.384][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.399][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-04-09 08:06:07.399][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.399][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-04-09 08:06:07.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:07.415][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2022-04-09 08:06:07.415][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.415][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:07.415][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:07.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.431][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.462][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.540][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.571][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-04-09 08:06:07.571][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-04-09 08:06:07.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:07.571][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2022-04-09 08:06:07.571][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.571][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:07.571][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:07.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.603][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.603][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.665][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.696][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.728][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-04-09 08:06:07.728][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.728][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-04-09 08:06:07.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:07.728][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2022-04-09 08:06:07.728][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.728][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:07.728][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:07.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.759][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.774][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.790][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.790][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.806][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.853][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:07.868][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-04-09 08:06:07.868][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:07.868][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-04-09 08:06:07.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:07.868][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2022-04-09 08:06:07.868][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:07.868][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:07.868][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:07.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:07.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:07.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:07.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:07.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:07.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:07.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:07.884][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.884][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.884][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.899][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:07.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.962][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.993][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:07.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.009][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-04-09 08:06:08.009][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:08.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-04-09 08:06:08.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.009][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2022-04-09 08:06:08.009][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:08.024][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:08.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:08.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.024][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.040][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.040][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.040][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.087][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.149][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.165][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-04-09 08:06:08.165][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:08.165][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-04-09 08:06:08.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.165][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2022-04-09 08:06:08.165][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:08.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:08.181][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:08.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.181][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.181][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.212][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.306][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.321][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-04-09 08:06:08.321][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:08.321][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-04-09 08:06:08.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.321][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2022-04-09 08:06:08.321][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:08.337][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:08.337][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:08.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.337][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.337][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.368][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.384][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.415][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.462][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.477][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-04-09 08:06:08.477][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:08.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-04-09 08:06:08.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.477][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2022-04-09 08:06:08.477][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:08.493][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:08.493][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:08.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.493][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.509][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.509][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.571][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.571][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.618][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:08.634][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-04-09 08:06:08.634][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:08.634][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-04-09 08:06:08.634][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.634][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2022-04-09 08:06:08.649][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:08.649][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:08.649][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:08.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.649][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.665][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.665][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:08.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:08.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.774][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:08.806][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:08.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:08.806][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:08.806][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:06:08.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:08.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:08.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:08.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:08.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:08.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:08.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:08.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:08.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.180][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:09.180][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:09.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1eb5a44d25716d90ff717fcfe93533e3".
biodb.TRACE[2022-04-09 08:06:09.180][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.180][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content".
biodb.DEBUG[2022-04-09 08:06:09.180][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:09.196][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:09.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4ef91a3654a792571304ae6f83c5871b".
biodb.TRACE[2022-04-09 08:06:09.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.196][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content".
biodb.DEBUG[2022-04-09 08:06:09.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:09.196][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-04-09 08:06:09.196][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:09.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-04-09 08:06:09.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.212][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2022-04-09 08:06:09.212][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:09.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:09.212][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:09.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:09.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:09.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.259][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:09.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.290][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:09.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:09.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:09.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.352][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:09.384][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-04-09 08:06:09.384][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:09.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-04-09 08:06:09.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.384][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2022-04-09 08:06:09.384][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:09.399][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:09.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:09.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.399][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.415][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:09.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:09.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.415][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.415][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:09.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:09.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.415][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:09.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.430][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.462][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:09.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.524][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.540][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:09.555][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:09.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:09.555][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.555][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:06:09.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.883][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:09.883][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:09.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-09 08:06:09.883][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:09.883][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-09 08:06:09.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:09.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:09.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:09.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:09.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:09.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:09.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:09.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:10.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:10.212][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:10.212][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-09 08:06:10.227][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:10.227][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.321][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.321][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.321][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:10.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.321][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:10.337][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.337][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.337][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:10.337][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.337][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:10.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.352][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.352][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.352][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:10.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.352][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:10.368][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:10.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.368][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:10.368][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:10.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:10.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.383][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.383][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:10.415][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:10.415][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:10.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.462][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.462][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:10.462][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.462][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:10.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.477][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2022-04-09 08:06:10.477][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:10.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2022-04-09 08:06:10.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.477][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml".
biodb.DEBUG[2022-04-09 08:06:10.477][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:10.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:10.477][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:10.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.493][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.540][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.571][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.587][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.633][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.649][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2022-04-09 08:06:10.649][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:10.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2022-04-09 08:06:10.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.649][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml".
biodb.DEBUG[2022-04-09 08:06:10.649][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:10.665][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:10.665][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:10.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.665][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.680][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.680][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.712][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.727][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.743][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.743][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.743][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.758][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.758][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.758][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.774][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.805][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:10.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:10.821][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:10.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:10.821][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.821][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:10.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:10.836][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2022-04-09 08:06:10.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:10.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2022-04-09 08:06:10.836][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:10.836][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml".
biodb.DEBUG[2022-04-09 08:06:10.836][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:10.852][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:10.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:10.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:10.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:10.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:10.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:10.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:10.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:10.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:10.852][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.852][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.868][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.868][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.868][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.883][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:10.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.915][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:10.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.930][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.946][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.008][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:11.024][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2022-04-09 08:06:11.024][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:11.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2022-04-09 08:06:11.024][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.024][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml".
biodb.DEBUG[2022-04-09 08:06:11.024][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:11.040][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:11.040][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:11.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.040][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.040][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.102][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.102][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.118][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.133][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.180][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:11.196][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2022-04-09 08:06:11.196][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:11.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2022-04-09 08:06:11.211][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.211][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml".
biodb.DEBUG[2022-04-09 08:06:11.211][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:11.211][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:11.211][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:11.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.227][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.243][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.290][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.290][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.290][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.321][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.368][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.399][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:11.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.415][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.430][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:11.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.461][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.461][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.477][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.477][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:11.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.508][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:11.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:11.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:11.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.508][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:11.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.524][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:11.524][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:11.524][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:11.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:11.586][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:11.586][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:11.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:11.586][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.586][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:11.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:11.586][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2022-04-09 08:06:11.602][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:11.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2022-04-09 08:06:11.602][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.602][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml".
biodb.DEBUG[2022-04-09 08:06:11.602][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:11.602][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:11.602][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:11.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.618][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.618][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.618][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.633][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.664][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.680][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.696][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.696][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.711][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.711][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.758][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:11.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:11.774][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2022-04-09 08:06:11.774][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:11.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2022-04-09 08:06:11.774][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:11.774][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml".
biodb.DEBUG[2022-04-09 08:06:11.774][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:11.789][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:11.789][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:11.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:11.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:11.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:11.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:11.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:11.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:11.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:11.789][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.805][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:11.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:11.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.914][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:11.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.039][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.055][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2022-04-09 08:06:12.055][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:12.055][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2022-04-09 08:06:12.055][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.055][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml".
biodb.DEBUG[2022-04-09 08:06:12.055][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:12.071][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:12.071][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:12.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.071][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.071][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.086][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.086][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.118][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.118][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.133][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.149][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.211][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.227][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2022-04-09 08:06:12.227][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:12.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2022-04-09 08:06:12.227][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.227][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml".
biodb.DEBUG[2022-04-09 08:06:12.243][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:12.243][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:12.243][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:12.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.321][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.383][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.399][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2022-04-09 08:06:12.399][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:12.399][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2022-04-09 08:06:12.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.414][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml".
biodb.DEBUG[2022-04-09 08:06:12.414][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:12.414][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:12.414][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:12.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.446][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.477][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.493][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.555][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.571][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2022-04-09 08:06:12.571][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:12.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2022-04-09 08:06:12.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.571][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml".
biodb.DEBUG[2022-04-09 08:06:12.571][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:12.586][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:12.586][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:12.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.617][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.664][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.727][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.742][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2022-04-09 08:06:12.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:12.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2022-04-09 08:06:12.742][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.742][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml".
biodb.DEBUG[2022-04-09 08:06:12.742][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:12.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:12.758][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:12.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.758][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.774][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.774][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.805][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.836][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:12.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.852][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.899][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.914][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:12.914][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:12.914][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:12.914][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.914][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:12.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:12.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:12.946][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2022-04-09 08:06:12.946][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:12.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2022-04-09 08:06:12.946][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:12.946][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml".
biodb.DEBUG[2022-04-09 08:06:12.946][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:12.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:12.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:12.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:12.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:12.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:12.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:12.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:12.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:12.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:12.961][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:12.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:12.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:12.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:12.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.992][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:12.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:12.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:12.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.008][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.024][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.055][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.102][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.102][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:13.102][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:13.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:13.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:13.117][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:13.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.117][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2022-04-09 08:06:13.117][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:13.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2022-04-09 08:06:13.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:13.133][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml".
biodb.DEBUG[2022-04-09 08:06:13.133][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:13.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:13.133][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:13.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.149][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:13.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.164][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:13.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:13.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:13.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:13.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:13.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.180][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.196][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.196][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.196][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.211][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.227][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.227][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.289][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.305][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2022-04-09 08:06:13.305][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:13.305][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2022-04-09 08:06:13.305][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:13.305][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml".
biodb.DEBUG[2022-04-09 08:06:13.305][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:13.305][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:13.321][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:13.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.321][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.321][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:13.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:13.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.352][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.367][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.399][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.399][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:13.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.399][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.399][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.414][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.461][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.477][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:13.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.492][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.492][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.508][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:13.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.524][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:13.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.570][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.570][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.586][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:06:13.586][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:13.586][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.711][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:13.711][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:13.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:13.727][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:13.727][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:13.727][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:13.727][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:13.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:13.727][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:13.727][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:13.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.774][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:13.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.789][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.805][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:13.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.852][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.852][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.867][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:13.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.899][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:13.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:13.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:13.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.899][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.914][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:13.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:13.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:13.930][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:13.930][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:13.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.977][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:13.977][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:13.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:13.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:13.977][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:13.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:13.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:13.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:13.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:13.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:13.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:13.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:13.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:13.992][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2022-04-09 08:06:14.008][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:14.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2022-04-09 08:06:14.008][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:14.008][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml".
biodb.DEBUG[2022-04-09 08:06:14.008][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:14.008][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:14.008][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:14.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.024][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.024][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.055][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.070][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.086][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.117][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.164][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:14.180][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2022-04-09 08:06:14.180][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:14.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2022-04-09 08:06:14.180][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:14.180][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml".
biodb.DEBUG[2022-04-09 08:06:14.180][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:14.180][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:14.180][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:14.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.195][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.195][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.211][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.227][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.258][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.274][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.274][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.289][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.320][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.336][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:14.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.352][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:14.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:14.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:14.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.352][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.367][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:14.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.398][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:14.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:14.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:14.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.398][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.398][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:14.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.430][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:14.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:14.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:14.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.430][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.445][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.445][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:14.461][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:14.461][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:14.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:14.492][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:14.508][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:14.508][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:14.508][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:14.508][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:14.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:14.523][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2022-04-09 08:06:14.523][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:14.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2022-04-09 08:06:14.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:14.539][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml".
biodb.DEBUG[2022-04-09 08:06:14.539][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:14.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:14.539][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:14.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.570][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.602][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.680][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:14.695][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2022-04-09 08:06:14.695][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:14.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2022-04-09 08:06:14.695][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:14.711][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml".
biodb.DEBUG[2022-04-09 08:06:14.711][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:14.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:14.711][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:14.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.727][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:14.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:14.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.742][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:14.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.789][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:14.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:14.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.805][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:14.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.805][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.852][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:14.867][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:14.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.883][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:14.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:14.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:14.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.883][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.898][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:14.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.914][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:14.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:14.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:14.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.930][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.930][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:06:14.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:14.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:14.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:14.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:14.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:14.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:14.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.961][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:14.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:14.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:14.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.961][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.977][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:06:14.977][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:14.977][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:14.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:14.992][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:14.992][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-09 08:06:14.992][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:15.008][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:15.102][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:15.102][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:15.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:15.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.102][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:15.102][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:15.102][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:15.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:15.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.117][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:15.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:15.133][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:15.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:15.133][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.133][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:15.133][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:15.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.148][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:15.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:15.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:15.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.164][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:15.180][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:15.180][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:15.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:15.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:15.227][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:15.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:15.227][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.227][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:15.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.258][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:15.258][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:15.258][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:15.273][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.273][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:15.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.320][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:15.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.336][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:15.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:15.336][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:15.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.336][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:15.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:15.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.367][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:15.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:15.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:15.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.383][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.383][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:15.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.414][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:15.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:15.414][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:15.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.414][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.414][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:15.430][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:15.430][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:15.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:15.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:15.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:15.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:15.492][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.492][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:15.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:15.523][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:15.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:15.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.523][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:15.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:15.570][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2022-04-09 08:06:15.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:15.570][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2022-04-09 08:06:15.570][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.570][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml".
biodb.DEBUG[2022-04-09 08:06:15.570][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:15.570][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:15.570][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:15.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.586][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.648][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.648][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:15.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:15.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:15.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:15.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.680][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:15.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.726][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:15.742][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2022-04-09 08:06:15.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:15.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2022-04-09 08:06:15.742][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:15.742][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml".
biodb.DEBUG[2022-04-09 08:06:15.742][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:15.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:15.758][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:15.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.758][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.758][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.758][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.773][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:15.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:15.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:15.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.773][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:15.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:15.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:15.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:15.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.789][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.805][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.820][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:15.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.820][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.836][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:15.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:15.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:15.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:15.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.898][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:15.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:15.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.930][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:15.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:15.930][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:15.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.930][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.930][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.945][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:15.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.961][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:15.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:15.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:15.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.976][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.976][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:06:15.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:15.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:15.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:15.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:15.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:15.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:15.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.008][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:16.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:16.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:16.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.008][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.023][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2022-04-09 08:06:16.023][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:16.023][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:16.117][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:16.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:16.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:16.117][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:16.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:16.133][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:16.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:16.133][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:16.133][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:16.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.180][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:16.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.195][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:16.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:16.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:16.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.211][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.211][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:16.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.226][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:16.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:16.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:16.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.242][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.242][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:16.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:16.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.273][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:16.273][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:16.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:16.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.289][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:16.304][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:16.304][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:16.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:16.351][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:16.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90efcfe115f7c339aea3aa4183474f2a".
biodb.TRACE[2022-04-09 08:06:16.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:16.351][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90efcfe115f7c339aea3aa4183474f2a.content".
biodb.DEBUG[2022-04-09 08:06:16.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.398][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2022-04-09 08:06:16.398][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:16.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2022-04-09 08:06:16.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:16.398][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml".
biodb.DEBUG[2022-04-09 08:06:16.398][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:16.398][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:16.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:16.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.414][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.414][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.445][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.461][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.461][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.461][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:16.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:16.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.476][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:16.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:16.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.508][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.508][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.508][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.554][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.554][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:16.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.586][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:16.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:16.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:16.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.601][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:16.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.617][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:16.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:16.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:16.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.633][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.633][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.633][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:16.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.648][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:16.664][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:16.664][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:16.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.664][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:16.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2022-04-09 08:06:16.679][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:16.679][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:16.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.726][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:16.726][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:16.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:16.726][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:16.726][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:16.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.789][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2022-04-09 08:06:16.789][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:16.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2022-04-09 08:06:16.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:16.789][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml".
biodb.DEBUG[2022-04-09 08:06:16.789][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:16.804][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:16.804][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:16.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.804][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.820][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.820][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.851][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:16.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:16.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:16.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:16.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.883][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.945][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:16.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:16.961][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2022-04-09 08:06:16.961][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:16.961][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2022-04-09 08:06:16.961][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:16.961][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml".
biodb.DEBUG[2022-04-09 08:06:16.961][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:16.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:16.976][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:16.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:16.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:16.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:16.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:16.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:16.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:16.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:16.976][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:16.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:16.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:16.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:16.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:16.992][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.117][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:17.132][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2022-04-09 08:06:17.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:17.132][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2022-04-09 08:06:17.132][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:17.132][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml".
biodb.DEBUG[2022-04-09 08:06:17.132][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:17.132][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:17.148][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:17.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.148][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.164][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.211][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.226][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.226][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.289][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:17.304][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2022-04-09 08:06:17.304][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:17.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2022-04-09 08:06:17.304][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:17.304][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml".
biodb.DEBUG[2022-04-09 08:06:17.304][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:17.320][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:17.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:17.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.320][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.336][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.336][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.383][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.414][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.414][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.461][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:17.476][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2022-04-09 08:06:17.476][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:17.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2022-04-09 08:06:17.476][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:17.476][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml".
biodb.DEBUG[2022-04-09 08:06:17.476][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:17.492][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:17.492][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:17.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.492][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.492][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.507][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.507][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.523][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.539][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.632][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:17.648][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2022-04-09 08:06:17.648][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:17.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2022-04-09 08:06:17.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:17.648][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml".
biodb.DEBUG[2022-04-09 08:06:17.648][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:17.664][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:17.664][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:17.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.664][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.679][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.711][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.804][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:17.820][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2022-04-09 08:06:17.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:17.820][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2022-04-09 08:06:17.820][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:17.820][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml".
biodb.DEBUG[2022-04-09 08:06:17.820][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:17.836][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:17.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:17.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.836][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.851][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.851][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:17.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.851][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.851][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:17.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:17.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.914][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.914][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.914][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.976][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:17.976][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:17.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:17.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:17.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:17.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:17.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:17.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:17.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:17.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:17.992][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:17.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:17.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:17.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.007][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:06:18.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.039][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.039][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.039][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.054][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.054][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2022-04-09 08:06:18.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.070][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.070][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.085][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.085][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2022-04-09 08:06:18.101][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:18.101][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:18.117][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:18.117][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-09 08:06:18.117][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:18.117][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:18.210][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.226][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:18.226][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:18.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.226][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:18.226][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:18.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.242][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.257][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:18.257][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.257][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:18.257][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:18.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.273][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.273][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.289][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.289][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:18.304][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:18.304][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:18.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:18.335][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.351][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:18.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.351][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:18.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.382][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.382][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:18.382][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.382][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:18.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.429][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:18.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.445][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.445][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.460][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.460][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:18.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.492][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.492][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.507][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:18.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.523][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.539][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:18.554][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:18.554][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:18.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:18.601][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.601][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:18.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.601][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:18.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.726][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.726][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:18.726][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.726][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:18.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.757][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:18.757][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:18.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:18.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:18.757][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:18.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.804][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:18.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.820][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.820][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.820][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:18.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.851][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.867][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.867][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:18.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.898][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:18.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:18.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:18.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.898][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.914][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:06:18.914][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:18.914][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:18.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:18.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:18.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:18.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:18.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:18.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:18.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.007][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:19.023][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:19.023][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:19.023][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:19.023][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:19.023][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:19.023][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:19.023][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:19.023][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:19.023][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:19.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.085][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:19.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.085][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.101][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:19.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.132][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.148][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.148][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:19.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.163][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.179][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.179][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.179][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.195][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:19.195][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:19.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:19.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.242][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:19.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:19.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:19.257][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:19.257][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:19.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.304][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:19.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.320][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.320][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.335][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:19.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.351][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.367][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.367][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.382][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:19.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.398][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.398][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.398][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.413][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:19.413][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:19.413][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:19.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.460][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:19.460][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:19.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:19.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:19.476][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:19.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.523][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:19.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.538][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.554][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:19.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.570][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.585][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:06:19.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.617][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:19.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:19.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:19.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.617][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.632][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:06:19.632][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:19.632][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:19.663][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:19.663][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-04-09 08:06:19.663][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:19.663][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.757][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:19.757][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:19.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "73049ee91ee5cceff4f3bc8a5644d766".
biodb.TRACE[2022-04-09 08:06:19.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:19.773][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content".
biodb.DEBUG[2022-04-09 08:06:19.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.773][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2022-04-09 08:06:19.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:19.773][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2022-04-09 08:06:19.773][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:19.773][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml".
biodb.DEBUG[2022-04-09 08:06:19.773][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:19.788][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:19.788][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:19.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.788][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.804][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:19.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:19.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:19.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.820][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:19.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.835][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.851][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:19.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:19.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:19.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:19.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:19.882][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:19.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.945][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:19.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:19.960][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2022-04-09 08:06:19.960][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:19.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2022-04-09 08:06:19.960][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:19.960][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml".
biodb.DEBUG[2022-04-09 08:06:19.960][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:19.960][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:19.960][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:19.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:19.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:19.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:19.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:19.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:19.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:19.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:19.976][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.976][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:19.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:19.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.991][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:19.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:19.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.023][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.070][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.116][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:20.132][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2022-04-09 08:06:20.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:20.132][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2022-04-09 08:06:20.132][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:20.132][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml".
biodb.DEBUG[2022-04-09 08:06:20.132][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:20.148][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:20.148][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:20.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.148][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.148][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.163][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.163][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.195][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.288][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:20.304][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2022-04-09 08:06:20.304][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:20.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2022-04-09 08:06:20.304][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:20.304][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml".
biodb.DEBUG[2022-04-09 08:06:20.304][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:20.320][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:20.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:20.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.320][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.335][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.366][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.382][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.398][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.460][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.476][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:20.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.491][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:20.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:20.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:20.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.491][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.507][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:20.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.523][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:20.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:20.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:20.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.538][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:20.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:06:20.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.570][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:20.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:20.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:20.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.570][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:06:20.601][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:20.601][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:20.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:20.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:20.648][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:20.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d19727a9ac34aca2de50a6f942f16ddf".
biodb.TRACE[2022-04-09 08:06:20.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:20.648][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content".
biodb.DEBUG[2022-04-09 08:06:20.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:20.648][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2022-04-09 08:06:20.648][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:20.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2022-04-09 08:06:20.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:20.663][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml".
biodb.DEBUG[2022-04-09 08:06:20.663][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:20.663][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:20.663][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:20.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.695][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.695][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.710][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.710][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.726][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.741][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.804][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2022-04-09 08:06:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:20.819][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2022-04-09 08:06:20.835][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:20.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2022-04-09 08:06:20.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:20.835][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml".
biodb.DEBUG[2022-04-09 08:06:20.835][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:20.835][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:20.835][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:20.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:20.851][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.851][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.851][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.851][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.866][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:20.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:20.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:20.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.898][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:20.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.913][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.929][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.929][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.929][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.929][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.976][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:20.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:20.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:20.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:20.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:20.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:20.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:20.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:20.991][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2022-04-09 08:06:20.991][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:21.007][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2022-04-09 08:06:21.007][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.007][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml".
biodb.DEBUG[2022-04-09 08:06:21.007][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:21.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:21.007][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:21.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.023][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.023][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.054][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.085][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.101][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.148][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2022-04-09 08:06:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.163][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2022-04-09 08:06:21.179][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:21.179][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2022-04-09 08:06:21.179][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.179][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml".
biodb.DEBUG[2022-04-09 08:06:21.179][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:21.179][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:21.179][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:21.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.194][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.194][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.226][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.241][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.241][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.273][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.273][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.335][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.351][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2022-04-09 08:06:21.351][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:21.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2022-04-09 08:06:21.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.351][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml".
biodb.DEBUG[2022-04-09 08:06:21.351][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:21.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:21.366][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:21.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.366][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.382][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.382][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.413][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.429][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.429][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.507][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.523][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2022-04-09 08:06:21.523][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:21.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2022-04-09 08:06:21.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.538][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml".
biodb.DEBUG[2022-04-09 08:06:21.538][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:21.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:21.538][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:21.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.554][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.569][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.585][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.601][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.616][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.679][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:21.710][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2022-04-09 08:06:21.710][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:21.710][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2022-04-09 08:06:21.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:21.710][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml".
biodb.DEBUG[2022-04-09 08:06:21.710][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:21.710][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:21.710][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:21.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.726][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.726][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.726][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.726][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.741][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:21.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.757][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:21.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:21.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.772][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:21.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.804][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.819][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.866][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:21.866][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:21.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.882][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:21.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.897][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.897][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.897][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:06:21.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.929][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:21.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.944][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.944][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:06:21.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:21.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:21.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:21.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:21.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:21.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.976][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:21.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:21.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:21.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.976][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.991][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:21.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:21.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:06:21.991][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:21.991][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:21.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:21.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.038][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.038][cch$loadFileContent] Trying to load 1 files from cache: [1]: "bd904440f4fc2972890a98c52c563f7a".
biodb.TRACE[2022-04-09 08:06:22.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.054][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content".
biodb.DEBUG[2022-04-09 08:06:22.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.054][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2022-04-09 08:06:22.054][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:22.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2022-04-09 08:06:22.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.054][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml".
biodb.DEBUG[2022-04-09 08:06:22.054][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:22.069][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:22.069][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:22.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.069][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.085][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.101][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.116][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.116][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.132][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.147][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.210][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.226][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a7be5ffc012df03c41d74610ef07a76".
biodb.TRACE[2022-04-09 08:06:22.226][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content".
biodb.DEBUG[2022-04-09 08:06:22.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.241][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2022-04-09 08:06:22.241][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:22.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2022-04-09 08:06:22.241][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.241][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml".
biodb.DEBUG[2022-04-09 08:06:22.241][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:22.241][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:22.257][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:22.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.257][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.257][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.304][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.304][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.319][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.335][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.335][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.335][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.351][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.351][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.351][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.351][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.397][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.413][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2022-04-09 08:06:22.413][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:22.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2022-04-09 08:06:22.413][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.413][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml".
biodb.DEBUG[2022-04-09 08:06:22.429][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:22.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:22.429][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:22.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.444][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.460][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.476][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.507][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.507][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.522][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.522][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.569][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.600][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2022-04-09 08:06:22.600][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:22.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2022-04-09 08:06:22.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.600][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml".
biodb.DEBUG[2022-04-09 08:06:22.600][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:22.616][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:22.616][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:22.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.616][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:22.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:22.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.647][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:22.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.663][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.679][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:22.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.710][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.710][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.710][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.757][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.757][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:22.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.772][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:22.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.788][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.788][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:06:22.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.819][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:22.819][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.835][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:06:22.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.866][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:22.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.866][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.882][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:06:22.882][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:22.882][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:22.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:22.944][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.944][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.944][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:22.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.944][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:22.944][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.944][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:22.960][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.960][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:22.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:22.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:22.975][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:22.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:22.975][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:22.975][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:22.975][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:22.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:22.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:22.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:22.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:22.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:22.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:22.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:22.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:22.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.991][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:22.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:22.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:22.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:22.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.007][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:23.022][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:23.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:23.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.069][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.069][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:23.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.069][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:23.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.116][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:23.116][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.116][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:23.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.163][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:23.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.179][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.179][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.179][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.194][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:23.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.225][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.225][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.241][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:23.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.257][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.272][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.272][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:23.288][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:23.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:23.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.335][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.335][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:23.335][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.335][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:23.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.460][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.460][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:23.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.460][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:23.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.491][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.507][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:23.507][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.507][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:23.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.538][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:23.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.553][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.553][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.569][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:23.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.585][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.600][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:23.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.632][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:23.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:23.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:23.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.632][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:23.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.647][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:06:23.647][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:23.663][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:23.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:23.710][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:23.710][cch$loadFileContent] Trying to load 1 files from cache: [1]: "735359865bd435e9a652b6491588c177".
biodb.TRACE[2022-04-09 08:06:23.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.725][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content".
biodb.DEBUG[2022-04-09 08:06:23.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.757][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2022-04-09 08:06:23.757][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:23.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2022-04-09 08:06:23.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.757][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml".
biodb.DEBUG[2022-04-09 08:06:23.757][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:23.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:23.772][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:23.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.772][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.788][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:23.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:23.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:23.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:23.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:23.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:23.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:23.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:23.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:23.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.835][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:23.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.835][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:23.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:23.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:23.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:23.882][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:23.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.882][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.913][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2022-04-09 08:06:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:23.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:23.960][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2022-04-09 08:06:23.960][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:23.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2022-04-09 08:06:23.960][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:23.960][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml".
biodb.DEBUG[2022-04-09 08:06:23.960][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:23.975][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:23.975][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:23.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:23.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:23.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:23.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:23.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:23.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:23.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:23.975][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:23.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:23.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:23.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:23.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.007][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.038][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.053][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.116][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.132][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2022-04-09 08:06:24.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:24.132][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2022-04-09 08:06:24.132][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.132][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml".
biodb.DEBUG[2022-04-09 08:06:24.132][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:24.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:24.147][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:24.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.147][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.163][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.194][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.210][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.272][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.288][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:24.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.303][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:24.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.303][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.319][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:24.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.335][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:24.335][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.350][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:06:24.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.382][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:24.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.382][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.382][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.397][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.413][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:06:24.413][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:24.413][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:24.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.460][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:24.460][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:24.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8a541f1b4956cd259c40c32da3263881".
biodb.TRACE[2022-04-09 08:06:24.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.460][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content".
biodb.DEBUG[2022-04-09 08:06:24.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.506][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:24.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.522][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:24.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.538][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:24.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.569][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:24.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.569][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.585][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:24.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.600][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:24.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:24.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:24.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.616][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.616][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.616][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:24.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:24.631][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:24.631][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:24.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:24.678][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:24.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2ea9078bc4e1650d61bca0cacdbcb041".
biodb.TRACE[2022-04-09 08:06:24.678][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.678][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content".
biodb.DEBUG[2022-04-09 08:06:24.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.710][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2022-04-09 08:06:24.710][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:24.710][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2022-04-09 08:06:24.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.710][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml".
biodb.DEBUG[2022-04-09 08:06:24.710][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:24.725][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:24.725][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:24.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.725][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.741][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.741][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.741][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.788][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.819][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.866][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:24.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:24.881][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2022-04-09 08:06:24.881][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:24.881][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2022-04-09 08:06:24.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:24.881][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml".
biodb.DEBUG[2022-04-09 08:06:24.881][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:24.897][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:24.897][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:24.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:24.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:24.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:24.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:24.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:24.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:24.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:24.897][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.913][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.913][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:24.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:24.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:24.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:24.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:24.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.960][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:24.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.975][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:24.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.975][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:24.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.038][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:25.053][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2022-04-09 08:06:25.053][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:25.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2022-04-09 08:06:25.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.069][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml".
biodb.DEBUG[2022-04-09 08:06:25.069][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:25.069][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:25.069][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:25.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.085][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.100][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.116][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.116][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.131][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.147][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.210][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:25.241][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2022-04-09 08:06:25.241][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:25.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2022-04-09 08:06:25.256][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.256][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml".
biodb.DEBUG[2022-04-09 08:06:25.256][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:25.256][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:25.256][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:25.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.272][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.272][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.272][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.288][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.288][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.288][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.303][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.319][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.319][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.350][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.350][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.350][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.366][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.413][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:25.428][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2022-04-09 08:06:25.428][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:25.428][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2022-04-09 08:06:25.428][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.428][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml".
biodb.DEBUG[2022-04-09 08:06:25.428][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:25.444][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:25.444][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:25.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.444][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.459][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.459][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.491][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.538][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.553][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.553][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.600][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:25.616][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2022-04-09 08:06:25.616][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:25.616][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2022-04-09 08:06:25.616][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.616][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml".
biodb.DEBUG[2022-04-09 08:06:25.616][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:25.616][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:25.631][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:25.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.631][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.663][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.694][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.725][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.772][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:25.788][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2022-04-09 08:06:25.788][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:25.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2022-04-09 08:06:25.788][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.788][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml".
biodb.DEBUG[2022-04-09 08:06:25.788][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:25.803][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:25.803][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:25.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.803][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.819][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:25.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:25.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.866][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.881][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:25.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.897][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.944][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:25.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:25.975][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2022-04-09 08:06:25.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:25.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2022-04-09 08:06:25.975][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:25.975][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml".
biodb.DEBUG[2022-04-09 08:06:25.975][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:25.975][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:25.975][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:25.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:25.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:25.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:25.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:25.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:25.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:25.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:25.991][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:25.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:25.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.038][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.069][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.069][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.084][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.116][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.147][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2022-04-09 08:06:26.147][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:26.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2022-04-09 08:06:26.147][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.147][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml".
biodb.DEBUG[2022-04-09 08:06:26.147][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:26.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:26.147][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:26.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.163][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.163][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.178][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.178][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.178][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.178][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.241][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.303][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.319][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2022-04-09 08:06:26.319][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:26.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2022-04-09 08:06:26.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.319][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml".
biodb.DEBUG[2022-04-09 08:06:26.319][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:26.334][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:26.334][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:26.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.334][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.350][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.350][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.350][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.366][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.412][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.428][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.475][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.491][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2022-04-09 08:06:26.491][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:26.491][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2022-04-09 08:06:26.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.491][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml".
biodb.DEBUG[2022-04-09 08:06:26.491][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:26.506][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:26.506][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:26.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.506][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.522][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.522][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.553][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.584][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.647][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.756][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2022-04-09 08:06:26.756][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:26.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2022-04-09 08:06:26.756][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.772][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml".
biodb.DEBUG[2022-04-09 08:06:26.772][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:26.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:26.772][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:26.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.803][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.850][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.866][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.881][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.881][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.912][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:26.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:26.944][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2022-04-09 08:06:26.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:26.959][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2022-04-09 08:06:26.959][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:26.959][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml".
biodb.DEBUG[2022-04-09 08:06:26.959][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:26.959][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:26.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:26.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:26.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:26.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:26.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:26.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:26.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:26.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:26.975][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.975][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.975][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.991][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.991][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.006][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.022][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.037][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.053][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.053][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.069][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.116][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:27.131][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2022-04-09 08:06:27.131][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:27.131][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2022-04-09 08:06:27.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.131][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml".
biodb.DEBUG[2022-04-09 08:06:27.131][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:27.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:27.147][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:27.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.147][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.162][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.162][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.162][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.194][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.240][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.287][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:27.303][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2022-04-09 08:06:27.303][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:27.303][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2022-04-09 08:06:27.303][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.319][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml".
biodb.DEBUG[2022-04-09 08:06:27.319][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:27.319][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:27.319][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:27.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.334][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.350][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.365][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.365][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:27.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.397][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.459][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:27.475][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:27.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:27.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.475][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:27.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.506][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:27.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.522][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:27.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.522][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:27.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.553][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:27.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.569][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.569][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:27.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:27.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.600][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:27.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.615][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.615][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:27.631][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:27.631][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:27.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:27.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:27.678][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:27.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "73049ee91ee5cceff4f3bc8a5644d766".
biodb.TRACE[2022-04-09 08:06:27.678][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.678][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73049ee91ee5cceff4f3bc8a5644d766.content".
biodb.DEBUG[2022-04-09 08:06:27.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.756][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:27.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.772][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:27.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.772][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:27.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.803][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:27.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.819][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.819][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.834][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2022-04-09 08:06:27.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.850][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:27.850][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:27.850][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:27.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.850][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.865][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:27.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.865][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.865][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2022-04-09 08:06:27.881][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:27.881][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:27.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:27.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:27.928][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:27.928][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d19727a9ac34aca2de50a6f942f16ddf".
biodb.TRACE[2022-04-09 08:06:27.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:27.928][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d19727a9ac34aca2de50a6f942f16ddf.content".
biodb.DEBUG[2022-04-09 08:06:27.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:27.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:27.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:27.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:27.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:27.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:27.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:27.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.037][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:28.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.053][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.068][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.068][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2022-04-09 08:06:28.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.100][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.100][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.115][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2022-04-09 08:06:28.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.131][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.147][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.147][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.147][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2022-04-09 08:06:28.162][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:28.162][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:28.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:28.209][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.209][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "bd904440f4fc2972890a98c52c563f7a".
biodb.TRACE[2022-04-09 08:06:28.209][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.225][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd904440f4fc2972890a98c52c563f7a.content".
biodb.DEBUG[2022-04-09 08:06:28.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.240][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.240][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a7be5ffc012df03c41d74610ef07a76".
biodb.TRACE[2022-04-09 08:06:28.240][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.240][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a7be5ffc012df03c41d74610ef07a76.content".
biodb.DEBUG[2022-04-09 08:06:28.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.287][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:28.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.303][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.303][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.318][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2022-04-09 08:06:28.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.350][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.350][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.350][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2022-04-09 08:06:28.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.381][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.381][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.397][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.397][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2022-04-09 08:06:28.412][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:28.412][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:28.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:28.459][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.475][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:28.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.475][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:28.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.475][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:28.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.475][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:28.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.506][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:28.506][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.506][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:28.506][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:28.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.522][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.522][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.537][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:28.553][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:28.553][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:28.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:28.600][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.600][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:28.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.600][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:28.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.631][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.631][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.631][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:28.647][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.647][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:28.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.693][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:28.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.709][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.725][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.725][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:28.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.740][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.740][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.756][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:28.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.787][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:28.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:28.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:28.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.803][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:28.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.803][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.803][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:28.818][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:28.818][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:28.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:28.865][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.865][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:28.865][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.865][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:28.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:28.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:28.990][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:28.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:28.990][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:28.990][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:28.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:28.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:28.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:28.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:28.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:28.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:28.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.021][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:29.021][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:29.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:29.021][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:29.021][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:29.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.068][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:29.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.084][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.084][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.084][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:29.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.115][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.131][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.131][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:29.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.162][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.178][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.178][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2022-04-09 08:06:29.193][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:29.193][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:29.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:29.240][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:29.240][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:29.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "735359865bd435e9a652b6491588c177".
biodb.TRACE[2022-04-09 08:06:29.240][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:29.240][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/735359865bd435e9a652b6491588c177.content".
biodb.DEBUG[2022-04-09 08:06:29.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:29.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.365][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.365][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.381][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:29.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.396][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.412][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.412][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2022-04-09 08:06:29.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.443][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.443][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.459][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2022-04-09 08:06:29.459][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:29.475][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:29.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:29.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:29.521][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:29.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8a541f1b4956cd259c40c32da3263881".
biodb.TRACE[2022-04-09 08:06:29.521][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:29.521][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8a541f1b4956cd259c40c32da3263881.content".
biodb.DEBUG[2022-04-09 08:06:29.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.568][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:29.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.584][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.600][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.600][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:29.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.631][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.631][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:29.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.662][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:29.662][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:29.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:29.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.678][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.678][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:29.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2022-04-09 08:06:29.693][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:29.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:29.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:29.740][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:29.740][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:29.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2ea9078bc4e1650d61bca0cacdbcb041".
biodb.TRACE[2022-04-09 08:06:29.740][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:29.740][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2ea9078bc4e1650d61bca0cacdbcb041.content".
biodb.DEBUG[2022-04-09 08:06:29.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:29.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:29.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:29.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:29.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:29.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:29.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:29.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.131][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:30.131][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:30.131][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:30.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:30.131][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:30.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.146][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:30.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.162][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:30.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.178][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.178][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:30.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.209][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:30.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.224][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2022-04-09 08:06:30.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.240][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:30.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:30.271][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:30.271][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:30.365][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:30.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:06:30.365][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:30.365][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:06:30.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.459][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2022-04-09 08:06:30.459][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:30.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2022-04-09 08:06:30.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:30.474][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml".
biodb.DEBUG[2022-04-09 08:06:30.474][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:30.474][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:30.474][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:30.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.506][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.506][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.553][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.568][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:30.568][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.631][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.646][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2022-04-09 08:06:30.646][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:30.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2022-04-09 08:06:30.646][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:30.646][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml".
biodb.DEBUG[2022-04-09 08:06:30.646][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:30.662][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:30.662][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:30.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.662][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.678][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.678][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.693][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.709][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.724][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:30.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.740][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.756][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.771][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.771][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.818][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:30.818][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:30.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.834][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:30.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.849][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.849][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:30.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.881][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:30.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.881][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.881][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.896][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:30.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.912][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:30.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:30.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:30.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.927][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.927][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:30.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:30.943][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:06:30.943][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:30.943][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:30.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:30.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:30.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:30.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:30.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:30.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:30.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:30.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:30.990][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:30.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d5104bb979c9ec31aa9634ac7a986155".
biodb.TRACE[2022-04-09 08:06:30.990][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:30.990][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content".
biodb.DEBUG[2022-04-09 08:06:31.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.006][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2022-04-09 08:06:31.006][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:31.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2022-04-09 08:06:31.006][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.006][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml".
biodb.DEBUG[2022-04-09 08:06:31.006][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:31.021][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:31.021][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:31.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.021][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.037][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.037][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.084][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.084][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.099][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.115][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.131][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.162][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.193][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2022-04-09 08:06:31.193][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:31.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2022-04-09 08:06:31.209][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.209][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml".
biodb.DEBUG[2022-04-09 08:06:31.209][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:31.209][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:31.209][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:31.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.224][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.240][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.256][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.271][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.271][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.365][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.396][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:31.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.412][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.412][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.427][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:06:31.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.443][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.459][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.459][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:31.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.490][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:31.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:31.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:31.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.490][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:31.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.506][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.506][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:31.506][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:31.521][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:31.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:31.568][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:31.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "beb9d154bf0d4e4f372dd6176fab59e2".
biodb.TRACE[2022-04-09 08:06:31.568][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.568][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content".
biodb.DEBUG[2022-04-09 08:06:31.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.584][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2022-04-09 08:06:31.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:31.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2022-04-09 08:06:31.584][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.584][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml".
biodb.DEBUG[2022-04-09 08:06:31.584][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:31.584][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:31.584][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:31.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.599][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.599][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.615][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.631][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.662][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.677][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.724][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.740][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2022-04-09 08:06:31.740][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:31.755][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2022-04-09 08:06:31.755][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.755][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml".
biodb.DEBUG[2022-04-09 08:06:31.755][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:31.755][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:31.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:31.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.787][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.802][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.834][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.834][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.849][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.865][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.896][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:31.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:31.927][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2022-04-09 08:06:31.927][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:31.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2022-04-09 08:06:31.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:31.927][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml".
biodb.DEBUG[2022-04-09 08:06:31.927][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:31.927][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:31.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:31.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:31.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:31.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:31.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:31.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:31.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:31.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:31.943][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.943][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:31.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.943][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:31.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:31.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.037][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.084][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:32.099][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2022-04-09 08:06:32.099][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:32.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2022-04-09 08:06:32.099][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:32.099][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml".
biodb.DEBUG[2022-04-09 08:06:32.099][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:32.099][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:32.099][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:32.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.115][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.162][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.162][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.193][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:32.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.209][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.209][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.255][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.287][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:32.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.302][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.318][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.318][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:06:32.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.334][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.334][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.349][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:06:32.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.380][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.380][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.380][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.396][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:06:32.396][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:32.412][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:32.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:32.459][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:32.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:32.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:32.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:32.459][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:32.474][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:32.474][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:32.474][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:32.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:32.474][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:32.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.521][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:32.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.537][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.537][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.552][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.552][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:32.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.584][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.584][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.584][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:32.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.615][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.615][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.630][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.630][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:32.646][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:32.646][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:32.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:32.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:32.693][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:32.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:32.693][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:32.693][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:32.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.740][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:32.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.755][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.755][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.771][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.771][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:32.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.802][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.802][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.818][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:32.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.833][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.849][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.849][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:32.865][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:32.865][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:32.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:32.912][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:32.912][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:32.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:32.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:32.912][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:32.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:32.958][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:32.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:32.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:32.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:32.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:32.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:32.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:32.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.974][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:32.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:32.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:32.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.990][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:32.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:32.990][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:33.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.021][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:33.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:33.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:33.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.037][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.037][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:06:33.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.052][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:33.052][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:33.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:33.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.068][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.068][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:06:33.083][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:33.083][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:33.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:33.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:33.146][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:33.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "460e5a713fddea0c2866dcbc892dfc2b".
biodb.TRACE[2022-04-09 08:06:33.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.146][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content".
biodb.DEBUG[2022-04-09 08:06:33.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:33.193][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2022-04-09 08:06:33.193][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:33.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2022-04-09 08:06:33.193][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.193][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml".
biodb.DEBUG[2022-04-09 08:06:33.193][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:33.193][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:33.193][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:33.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.208][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.240][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.287][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.287][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.287][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.349][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:33.365][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2022-04-09 08:06:33.365][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:33.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2022-04-09 08:06:33.365][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.380][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml".
biodb.DEBUG[2022-04-09 08:06:33.380][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:33.380][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:33.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:33.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.412][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.412][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.427][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.427][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.458][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.458][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.474][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.474][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.474][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.474][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.490][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.536][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:33.552][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2022-04-09 08:06:33.552][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:33.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2022-04-09 08:06:33.552][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.552][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml".
biodb.DEBUG[2022-04-09 08:06:33.552][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:33.568][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:33.568][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:33.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.568][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.583][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.583][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.630][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.708][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:33.724][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2022-04-09 08:06:33.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:33.724][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2022-04-09 08:06:33.724][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.724][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml".
biodb.DEBUG[2022-04-09 08:06:33.740][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:33.740][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:33.740][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:33.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.771][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.802][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.818][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:33.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.896][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:33.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:33.911][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2022-04-09 08:06:33.911][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:33.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2022-04-09 08:06:33.911][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:33.911][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml".
biodb.DEBUG[2022-04-09 08:06:33.911][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:33.927][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:33.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:33.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:33.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:33.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:33.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:33.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:33.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:33.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:33.927][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.943][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:33.990][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.021][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.068][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.083][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:34.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.099][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:34.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:34.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:34.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.115][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.115][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.115][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:34.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.130][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:34.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.146][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:34.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:34.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:34.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.146][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.161][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.161][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:34.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.177][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:34.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:34.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:34.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.193][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:34.208][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:34.208][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:34.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:34.255][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:34.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0908e22233c03290fae8e61cbb27ce42".
biodb.TRACE[2022-04-09 08:06:34.255][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:34.255][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content".
biodb.DEBUG[2022-04-09 08:06:34.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.302][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2022-04-09 08:06:34.302][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:34.302][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2022-04-09 08:06:34.302][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:34.302][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml".
biodb.DEBUG[2022-04-09 08:06:34.302][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:34.318][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:34.318][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:34.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.318][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.333][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.349][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.396][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.396][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.458][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.474][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2022-04-09 08:06:34.474][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:34.474][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2022-04-09 08:06:34.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:34.474][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml".
biodb.DEBUG[2022-04-09 08:06:34.489][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:34.489][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:34.489][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:34.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.489][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.505][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.521][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.536][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.552][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.568][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.568][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.568][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.630][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.646][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2022-04-09 08:06:34.646][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:34.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2022-04-09 08:06:34.646][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:34.661][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml".
biodb.DEBUG[2022-04-09 08:06:34.661][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:34.661][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:34.661][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:34.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.693][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.739][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.802][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.818][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2022-04-09 08:06:34.818][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:34.818][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2022-04-09 08:06:34.818][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:34.818][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml".
biodb.DEBUG[2022-04-09 08:06:34.818][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:34.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:34.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:34.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:34.849][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.849][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.849][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.864][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.896][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:34.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.974][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:34.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:34.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:34.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:34.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:34.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:34.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:34.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:34.989][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2022-04-09 08:06:34.989][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:34.989][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2022-04-09 08:06:34.989][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:35.005][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml".
biodb.DEBUG[2022-04-09 08:06:35.005][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:35.005][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:35.005][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:35.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.021][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.036][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.036][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.068][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.099][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.099][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.146][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2022-04-09 08:06:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:35.177][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2022-04-09 08:06:35.177][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:35.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2022-04-09 08:06:35.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:35.177][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml".
biodb.DEBUG[2022-04-09 08:06:35.177][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:35.177][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:35.177][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:35.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.193][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.193][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.255][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.271][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.271][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.286][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.286][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.333][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:35.349][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2022-04-09 08:06:35.349][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:35.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2022-04-09 08:06:35.349][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:35.349][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml".
biodb.DEBUG[2022-04-09 08:06:35.349][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:35.364][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:35.364][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:35.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.364][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.380][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.380][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.380][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.396][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.427][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.505][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:35.521][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2022-04-09 08:06:35.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:35.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2022-04-09 08:06:35.521][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:35.521][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml".
biodb.DEBUG[2022-04-09 08:06:35.536][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:35.536][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:35.536][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:35.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.552][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.583][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.614][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.677][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:35.692][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2022-04-09 08:06:35.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:35.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2022-04-09 08:06:35.692][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:35.692][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml".
biodb.DEBUG[2022-04-09 08:06:35.692][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:35.708][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:35.708][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:35.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.724][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.739][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.786][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.833][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:35.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:35.864][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2022-04-09 08:06:35.864][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:35.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2022-04-09 08:06:35.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:35.864][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml".
biodb.DEBUG[2022-04-09 08:06:35.864][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:35.864][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:35.864][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:35.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:35.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:35.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:35.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:35.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:35.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:35.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:35.880][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.896][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:35.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:35.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.005][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:36.021][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2022-04-09 08:06:36.021][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:36.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2022-04-09 08:06:36.021][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.021][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml".
biodb.DEBUG[2022-04-09 08:06:36.021][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:36.036][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:36.036][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:36.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.036][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.052][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.083][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.083][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.114][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.114][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.177][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:36.192][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2022-04-09 08:06:36.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:36.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2022-04-09 08:06:36.192][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.208][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml".
biodb.DEBUG[2022-04-09 08:06:36.208][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:36.208][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:36.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:36.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.224][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.255][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.270][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.286][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.349][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:36.364][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2022-04-09 08:06:36.364][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:36.364][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2022-04-09 08:06:36.364][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.380][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml".
biodb.DEBUG[2022-04-09 08:06:36.380][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:36.380][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:36.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:36.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.395][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.427][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.474][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.474][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.474][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.520][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:36.536][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2022-04-09 08:06:36.536][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:36.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2022-04-09 08:06:36.552][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.552][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml".
biodb.DEBUG[2022-04-09 08:06:36.552][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:36.552][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:36.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:36.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.567][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.567][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.567][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.583][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.599][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.708][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:36.724][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2022-04-09 08:06:36.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:36.724][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2022-04-09 08:06:36.724][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.724][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml".
biodb.DEBUG[2022-04-09 08:06:36.724][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:36.724][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:36.724][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:36.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.739][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.802][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.880][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:36.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:36.895][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2022-04-09 08:06:36.895][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:36.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2022-04-09 08:06:36.895][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:36.895][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml".
biodb.DEBUG[2022-04-09 08:06:36.895][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:36.911][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:36.911][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:36.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:36.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:36.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:36.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:36.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:36.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:36.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:36.911][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.927][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.927][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:36.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:36.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.974][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.989][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:36.989][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:36.989][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.005][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.052][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.067][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2022-04-09 08:06:37.067][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:37.067][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2022-04-09 08:06:37.067][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:37.083][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml".
biodb.DEBUG[2022-04-09 08:06:37.083][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:37.083][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:37.083][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:37.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.099][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.114][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.130][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.145][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.161][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.177][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.223][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.239][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2022-04-09 08:06:37.239][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:37.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2022-04-09 08:06:37.239][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:37.239][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml".
biodb.DEBUG[2022-04-09 08:06:37.255][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:37.255][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:37.255][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:37.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:37.270][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.270][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.286][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.286][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.302][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.348][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.348][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.395][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.411][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2022-04-09 08:06:37.427][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:37.427][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2022-04-09 08:06:37.427][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:37.427][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml".
biodb.DEBUG[2022-04-09 08:06:37.427][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:37.427][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:37.427][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:37.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:37.442][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.442][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.442][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.458][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.489][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.489][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.583][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.598][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2022-04-09 08:06:37.598][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:37.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2022-04-09 08:06:37.598][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:37.598][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml".
biodb.DEBUG[2022-04-09 08:06:37.598][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:37.614][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:37.614][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:37.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:37.614][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.614][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.630][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.630][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.630][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.645][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.661][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.677][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.755][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.770][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2022-04-09 08:06:37.770][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:37.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2022-04-09 08:06:37.770][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:37.770][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml".
biodb.DEBUG[2022-04-09 08:06:37.770][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:37.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:37.786][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:37.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:37.786][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.802][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.817][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.833][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.848][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:37.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.864][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.864][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.927][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:37.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:37.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:37.942][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2022-04-09 08:06:37.942][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:37.958][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2022-04-09 08:06:37.958][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:37.958][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml".
biodb.DEBUG[2022-04-09 08:06:37.958][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:37.958][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:37.958][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:37.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:37.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:37.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:37.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:37.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:37.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:37.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:37.973][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.973][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.989][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.005][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.052][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.052][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.052][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.052][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.098][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:38.114][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2022-04-09 08:06:38.114][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:38.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2022-04-09 08:06:38.130][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:38.130][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml".
biodb.DEBUG[2022-04-09 08:06:38.130][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:38.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:38.130][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:38.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.145][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.145][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.161][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.161][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.176][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.208][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.223][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.223][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.223][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.286][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:38.301][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2022-04-09 08:06:38.301][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:38.301][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2022-04-09 08:06:38.301][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:38.301][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml".
biodb.DEBUG[2022-04-09 08:06:38.301][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:38.301][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:38.317][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:38.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.317][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.380][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.411][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.458][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:38.473][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2022-04-09 08:06:38.473][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:38.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2022-04-09 08:06:38.473][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:38.473][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml".
biodb.DEBUG[2022-04-09 08:06:38.473][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:38.489][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:38.489][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:38.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.489][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.505][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.505][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.505][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.520][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.551][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.551][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.567][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.583][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.630][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2022-04-09 08:06:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:38.645][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2022-04-09 08:06:38.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-09 08:06:38.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2022-04-09 08:06:38.661][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:38.661][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml".
biodb.DEBUG[2022-04-09 08:06:38.661][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-09 08:06:38.661][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-09 08:06:38.661][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-09 08:06:38.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.676][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.676][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.692][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.692][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.692][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:38.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-09 08:06:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.739][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.739][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.755][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.755][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.817][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:38.864][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:38.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.864][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:38.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:38.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:38.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.880][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.880][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:38.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.911][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:38.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:38.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:38.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.926][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.926][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.926][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:38.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.958][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:38.958][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:38.958][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:38.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.958][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.973][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:38.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:38.973][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:38.973][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:38.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:38.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:38.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:38.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:38.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:38.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:38.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:39.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:39.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:39.020][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:06:39.020][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:39.036][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:06:39.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.098][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:39.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.114][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.129][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:39.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.161][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.161][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.161][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.161][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:39.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.192][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.192][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.208][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.208][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.208][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:39.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:39.223][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:39.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:39.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:39.286][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:39.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:06:39.286][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:39.286][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:06:39.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.395][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:39.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.411][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.411][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.426][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:39.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.442][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.458][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.458][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.458][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:39.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.489][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.504][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.504][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2022-04-09 08:06:39.520][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:39.520][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:39.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:39.567][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:39.567][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:39.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d5104bb979c9ec31aa9634ac7a986155".
biodb.TRACE[2022-04-09 08:06:39.567][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:39.567][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5104bb979c9ec31aa9634ac7a986155.content".
biodb.DEBUG[2022-04-09 08:06:39.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.645][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:39.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.661][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.661][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.661][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.661][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2022-04-09 08:06:39.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.692][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.708][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.708][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.708][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:39.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.739][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.739][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.754][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.754][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2022-04-09 08:06:39.770][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:39.770][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:39.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:39.801][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:39.817][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:39.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "beb9d154bf0d4e4f372dd6176fab59e2".
biodb.TRACE[2022-04-09 08:06:39.817][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:39.817][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/beb9d154bf0d4e4f372dd6176fab59e2.content".
biodb.DEBUG[2022-04-09 08:06:39.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:39.895][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:39.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:39.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:39.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:39.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:39.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:39.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:39.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:39.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.911][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:39.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:39.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:39.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:39.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.036][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.036][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.051][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2022-04-09 08:06:40.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.067][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.082][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.082][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2022-04-09 08:06:40.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.114][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.114][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2022-04-09 08:06:40.129][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:40.129][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:40.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:40.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:40.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:40.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:40.192][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:40.192][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:40.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:40.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:40.207][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:40.207][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:40.207][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:40.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.254][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:40.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.270][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.286][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:40.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.301][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.317][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.317][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.317][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:40.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.348][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.348][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.364][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.364][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.364][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:40.379][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:40.379][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:40.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:40.411][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:40.426][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:40.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:40.426][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:40.426][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:40.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.473][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:40.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.489][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.489][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.504][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.504][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:40.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.536][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.536][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.536][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:40.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.567][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.567][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:40.598][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:40.598][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:40.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:40.645][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:40.645][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:40.645][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:40.645][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:40.645][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:40.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:40.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.707][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.723][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:40.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.754][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.754][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.754][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.770][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.770][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2022-04-09 08:06:40.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.786][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:40.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:40.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:40.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.786][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:40.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.801][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2022-04-09 08:06:40.817][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:40.817][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:40.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:40.864][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:40.864][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:40.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "460e5a713fddea0c2866dcbc892dfc2b".
biodb.TRACE[2022-04-09 08:06:40.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:40.879][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/460e5a713fddea0c2866dcbc892dfc2b.content".
biodb.DEBUG[2022-04-09 08:06:40.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:40.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:40.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:40.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:40.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:40.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:40.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:40.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.004][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:41.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.020][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.020][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.035][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-09 08:06:41.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.051][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.067][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.067][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.067][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.082][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-09 08:06:41.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.098][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.098][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.114][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.114][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-09 08:06:41.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:41.114][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:41.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:41.176][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:41.176][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:41.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0908e22233c03290fae8e61cbb27ce42".
biodb.TRACE[2022-04-09 08:06:41.176][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:41.176][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0908e22233c03290fae8e61cbb27ce42.content".
biodb.DEBUG[2022-04-09 08:06:41.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.645][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:41.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.660][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.676][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.676][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2022-04-09 08:06:41.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.707][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.707][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.723][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2022-04-09 08:06:41.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.738][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.754][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.754][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.770][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2022-04-09 08:06:41.770][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:41.770][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:41.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:41.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:41.817][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:41.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4d5b921f88c8441be6a678700f44ffee".
biodb.TRACE[2022-04-09 08:06:41.817][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:41.832][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4d5b921f88c8441be6a678700f44ffee.content".
biodb.DEBUG[2022-04-09 08:06:41.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:41.895][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:41.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.910][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.910][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.926][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.926][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2022-04-09 08:06:41.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.942][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.942][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.957][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.957][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2022-04-09 08:06:41.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:41.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:41.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:41.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:41.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:41.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:41.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.988][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:41.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:41.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:41.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:41.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:41.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.004][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2022-04-09 08:06:42.004][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:42.004][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:42.035][biodb::testThat] 
biodb.INFO [2022-04-09 08:06:42.035][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-04-09 08:06:42.035][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-09 08:06:42.035][biodb::testThat] 
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:42.129][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:42.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:42.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:42.129][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:42.129][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:42.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:42.145][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:42.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:42.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:42.145][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:42.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.160][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:42.160][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:42.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:42.160][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:42.160][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:42.176][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:42.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.254][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.254][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:42.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:42.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:42.254][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.254][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.270][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.332][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.332][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.332][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.379][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:42.504][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:42.504][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:42.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:42.551][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:42.551][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:42.551][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:42.551][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:42.551][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:42.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.582][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:42.598][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:42.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:42.598][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:42.598][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:42.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:42.645][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:42.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.738][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.738][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:42.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:42.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:42.738][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.738][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.770][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.816][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.816][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.848][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:42.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:42.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:42.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:42.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:42.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:42.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:42.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.066][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.066][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:43.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:43.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:43.066][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.066][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.098][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.145][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.145][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.145][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.176][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.191][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:43.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.395][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.395][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:43.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:43.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:43.395][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.395][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.426][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.457][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.473][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:43.473][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.504][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.504][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:43.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.629][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:43.629][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:43.629][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:43.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:43.676][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:43.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:43.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:43.676][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:43.676][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:43.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:43.785][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:43.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:43.785][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:43.801][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:43.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:43.832][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:43.832][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:43.832][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:43.832][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:43.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:43.863][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:43.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:43.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:43.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:43.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:43.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:43.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:43.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.957][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.957][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:43.957][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:43.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:43.957][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:43.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.035][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.035][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.082][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:06:44.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.285][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.285][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:44.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:44.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:44.285][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.285][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.316][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.348][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.363][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:44.363][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.363][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.410][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.410][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.410][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.410][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:06:44.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.597][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.613][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:44.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:44.613][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:44.613][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.660][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.691][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.691][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.738][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:06:44.847][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:44.847][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:44.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:44.894][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:44.910][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:44.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-09 08:06:44.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:44.910][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-09 08:06:44.910][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:44.910][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:44.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-09 08:06:44.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:44.910][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-09 08:06:44.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:44.941][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:44.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:44.941][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-09 08:06:44.941][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:44.941][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-09 08:06:44.941][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:44.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:44.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:44.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:44.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:44.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:44.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:44.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.035][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.035][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:45.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:45.035][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:45.035][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.035][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.035][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.082][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.113][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.113][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.129][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.160][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:45.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:45.285][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:45.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:45.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:45.332][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:45.332][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:45.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3f1d442725dcc6ae0abe5c87cfaad307".
biodb.TRACE[2022-04-09 08:06:45.332][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:45.332][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3f1d442725dcc6ae0abe5c87cfaad307.content".
biodb.DEBUG[2022-04-09 08:06:45.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:45.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:45.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:45.379][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:45.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ef9eda9e8faa68b5f4644b265e186796".
biodb.TRACE[2022-04-09 08:06:45.379][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:45.379][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef9eda9e8faa68b5f4644b265e186796.content".
biodb.DEBUG[2022-04-09 08:06:45.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:45.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:45.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:45.425][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:45.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.519][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.519][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:45.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:45.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:45.519][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.519][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.519][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.597][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.613][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.613][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.644][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:45.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:45.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:45.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:45.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:45.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:45.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:45.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.863][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.863][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:45.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:45.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:45.863][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.863][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.957][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.957][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:45.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:45.988][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:46.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.207][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:46.207][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:46.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:46.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:46.222][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.285][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.300][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:46.300][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.300][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.332][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:46.457][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:46.457][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:46.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:46.503][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:46.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:46.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f077e512e38828ca0970d6a9a2df40b1".
biodb.TRACE[2022-04-09 08:06:46.503][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:46.503][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f077e512e38828ca0970d6a9a2df40b1.content".
biodb.DEBUG[2022-04-09 08:06:46.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:46.613][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:46.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1f74ce81a905644d346321032fe47e5f".
biodb.TRACE[2022-04-09 08:06:46.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:46.628][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1f74ce81a905644d346321032fe47e5f.content".
biodb.DEBUG[2022-04-09 08:06:46.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.660][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:46.660][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:46.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d7672f179ff5d0339b4462dafc99279b".
biodb.TRACE[2022-04-09 08:06:46.660][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:46.660][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d7672f179ff5d0339b4462dafc99279b.content".
biodb.DEBUG[2022-04-09 08:06:46.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:46.691][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:46.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:46.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:46.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:46.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:46.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:46.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:46.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.785][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:46.785][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:46.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:46.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:46.800][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.832][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.878][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:46.878][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.910][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.910][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2022-04-09 08:06:47.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.128][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.128][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:47.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:47.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:47.128][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.128][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.160][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.222][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:47.222][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.238][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.253][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2022-04-09 08:06:47.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.472][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.472][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:47.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:47.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:47.472][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.535][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.550][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.550][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.566][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.597][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2022-04-09 08:06:47.722][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:47.722][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:47.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:47.800][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:47.800][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:47.816][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:47.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:47.816][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:47.816][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:47.816][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:47.816][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:47.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:47.816][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:47.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:47.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:47.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:47.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:47.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:47.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:47.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:47.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:47.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:47.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:47.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.956][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.956][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:47.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:47.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:47.956][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:47.956][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:47.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:47.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.956][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:47.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:47.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:47.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.019][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.035][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.035][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.035][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.081][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:48.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.284][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.284][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:48.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:48.300][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:48.300][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.316][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.363][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.378][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.378][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.394][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.409][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:48.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.628][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.628][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:48.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:48.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:48.628][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.659][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.691][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.706][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:48.706][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.706][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.738][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.738][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:48.863][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:48.863][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:48.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:48.894][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:48.909][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:48.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:48.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:48.909][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:48.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:48.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:48.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:48.956][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:48.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:48.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:48.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:48.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:48.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:48.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:48.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.050][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.050][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:49.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:49.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:49.050][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.050][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.066][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.128][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.128][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.159][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:49.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:49.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:49.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:49.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:49.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:49.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:49.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:49.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.378][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.378][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:49.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:49.378][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:49.378][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.425][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.441][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.472][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:49.472][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.472][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.487][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.503][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:49.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:49.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:49.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:49.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:49.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:49.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:49.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.706][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.706][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:49.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:49.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:49.706][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.737][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.769][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.784][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:49.784][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.816][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.816][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:49.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:49.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:49.940][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:49.940][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:49.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:49.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:49.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:49.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:49.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:49.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:49.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:49.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:49.987][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:49.987][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:49.987][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:49.987][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:49.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:49.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:49.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:49.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:49.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:49.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:49.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:50.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:50.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:50.034][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:50.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.128][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.128][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:50.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:50.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:50.128][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.206][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.206][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.222][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.253][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:06:50.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.456][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.456][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:50.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:50.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:50.456][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.456][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.472][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.534][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.550][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:50.550][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.550][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.581][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:06:50.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:50.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:50.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:50.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:50.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:50.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:50.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.784][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.784][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:50.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:50.784][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:50.784][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.815][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.847][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.862][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:50.862][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.894][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.894][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:51.018][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:51.018][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:51.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:51.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:51.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:51.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:51.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:51.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:51.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:51.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:51.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:51.065][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-09 08:06:51.065][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:51.065][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-09 08:06:51.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:51.081][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:51.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-09 08:06:51.081][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:51.081][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-09 08:06:51.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:51.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:51.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:51.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:51.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:51.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:51.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:51.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:51.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:51.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:51.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:51.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:51.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:51.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:51.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:51.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:51.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:51.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:51.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:51.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:51.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:51.128][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:51.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:51.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:51.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:51.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:51.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:51.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:51.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.222][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.222][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:51.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:51.222][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:51.222][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.222][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.222][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.222][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.253][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.268][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.284][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.300][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.315][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.315][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.331][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.347][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.347][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:51.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:51.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:51.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:51.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:51.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:51.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:51.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.565][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.565][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:51.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:51.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:51.565][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.565][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.565][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.581][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.597][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.643][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.659][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.659][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.690][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2022-04-09 08:06:51.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:51.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:51.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:51.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:51.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:51.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:51.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.909][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.909][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:51.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:51.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:51.909][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.925][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:51.987][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.003][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:52.003][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.034][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:52.159][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:52.159][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:52.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:52.206][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:52.206][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:52.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "839357b56387b64c91d43055dd5c5193".
biodb.TRACE[2022-04-09 08:06:52.206][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:52.206][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/839357b56387b64c91d43055dd5c5193.content".
biodb.DEBUG[2022-04-09 08:06:52.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:52.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:52.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:52.253][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:52.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.346][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:52.346][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:52.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:52.346][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:52.346][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:52.346][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.346][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.362][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.378][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.425][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.440][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:52.440][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.440][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.471][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:52.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.596][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:52.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.690][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:52.690][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:52.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:52.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:52.690][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:52.690][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.768][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.784][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:52.784][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.815][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:52.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:52.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:52.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:52.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:52.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:52.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:52.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.034][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.034][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:53.034][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:53.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:53.034][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.034][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.065][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.081][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.112][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:53.112][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.112][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.128][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.159][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.268][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2022-04-09 08:06:53.268][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:53.268][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-09 08:06:53.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:53.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:53.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:53.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:53.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:53.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:53.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-09 08:06:53.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-09 08:06:53.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-09 08:06:53.315][cch$loadFileContent] Trying to load 1 files from cache: [1]: "432bde1fb4bc526aec38c781f579d7cb".
biodb.TRACE[2022-04-09 08:06:53.315][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-09 08:06:53.315][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/432bde1fb4bc526aec38c781f579d7cb.content".
biodb.DEBUG[2022-04-09 08:06:53.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:53.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:53.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:53.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:53.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:53.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:53.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:53.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:53.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:53.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:53.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:53.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:53.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:53.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:53.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:53.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:53.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:53.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:53.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:53.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:53.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-09 08:06:53.378][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-09 08:06:53.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:53.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:53.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:53.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:53.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:53.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:53.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.471][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.471][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:53.471][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:53.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:53.471][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.471][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.503][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.518][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.549][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.549][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.549][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.596][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.596][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2022-04-09 08:06:53.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:53.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:53.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:53.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:53.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:53.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:53.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:53.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.815][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.815][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:53.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:53.815][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:53.815][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.846][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.862][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.893][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.893][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:53.909][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:53.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:53.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:53.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:53.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.940][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.940][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2022-04-09 08:06:54.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-09 08:06:54.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:54.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:54.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:54.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:54.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:54.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-09 08:06:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.143][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:54.143][private$selectFields] 
biodb.TRACE[2022-04-09 08:06:54.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-09 08:06:54.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-09 08:06:54.143][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2022-04-09 08:06:54.143][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.143][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.190][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-09 08:06:54.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.237][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:54.237][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.237][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.268][ef$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.268][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-09 08:06:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2022-04-09 08:06:54.377][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-09 08:06:54.377][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-09 08:06:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-09 08:06:54.393][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-09 08:06:54.393][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-09 08:06:54.393][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-09 08:06:54.393][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-09 08:06:54.409][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-09 08:06:54.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-09 08:06:54.409][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-09 08:06:54.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-09 08:06:54.409][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-09 08:06:54.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1208 ]
> 
> proc.time()
   user  system elapsed 
  52.65    0.87   56.25

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.14-bioc-longtests/meat/biodbChebi.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package 'biodbChebi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)